Mercurial > repos > jeremie > package_pindel_0_2_5
changeset 11:aea585951b97 draft
Uploaded
| author | jeremie |
|---|---|
| date | Thu, 19 Jun 2014 10:17:34 -0400 |
| parents | ea5aad668099 |
| children | 4a11086ede4b |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 7 insertions(+), 3 deletions(-) [+] |
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--- a/tool_dependencies.xml Thu Jun 19 09:50:48 2014 -0400 +++ b/tool_dependencies.xml Thu Jun 19 10:17:34 2014 -0400 @@ -6,15 +6,19 @@ <package name="pindel" version="0.2.5"> <install version="1.0"> <actions> - <action type="shell_command">git clone https://github.com/genome/pindel.git pindel</action> - <!-- <action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action> --> + <!-- <action type="shell_command">git clone https://github.com/genome/pindel.git pindel</action> --> + <action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action> + <action type="shell_command">ls</action> + <action type="shell_command">cd ..</action> + <action type="shell_command">ls</action> <!-- <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> --> <!-- <action type="shell_command">unzip pindel-master.zip -d pindel</action>--> --> - <!-- <action type="shell_command">cd pindel</action> --> + <action type="shell_command">cd master</action> <action type="shell_command">make SAMTOOLS=~/samtools</action> + <action type="shell_command">./INSTALL ~/samtools</action> <action type="move_file"> <source>pindel</source> <destination>$INSTALL_DIR/</destination>