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changeset 9:2a543f239157 draft

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Bumped SPAN version to version build 0.9.0.4581 released on Dec 7, 2018 https://github.com/JetBrains-Research/galaxy-applications/commit/e9e440d6fe82bba5cdb92262d423eed6c0f72845
author jetbrains
date Wed, 12 Dec 2018 04:11:14 -0500
parents 66b2c9a128ab
children 932bcf6c9332
files span.xml tool_dependencies.xml
diffstat 2 files changed, 7 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/span.xml	Thu Nov 22 12:21:15 2018 -0500
+++ b/span.xml	Wed Dec 12 04:11:14 2018 -0500
@@ -1,7 +1,7 @@
-<tool id="span" name="SPAN" version="0.8.0.4533">
+<tool id="span" name="SPAN" version="0.9.0.4581">
     <description>Semi-supervised Peak Analyzer for ChIP-Seq data</description>
     <requirements>
-        <requirement type="package" version="0.8.0.4533">package_span_jar</requirement>
+        <requirement type="package" version="0.9.0.4581">package_span_jar</requirement>
     </requirements>
     <stdio>
         <!-- Wrapper ensures anything other than zero is an error -->
@@ -82,8 +82,8 @@
                Default value is 200bp, approximately the length of one nucleosome."/>
 
         <section name="advanced_options" title="Advanced Options">
-            <param name="memory" size="6" type="integer" value="2048" min="1024"
-                   label="Memory limit in megabytes" help="Default value is 2048 megabytes"/>
+            <param name="memory" size="6" type="integer" value="4096" min="1024"
+                   label="Memory limit in megabytes" help="Default value is 4096 megabytes"/>
             <param name="threads" argument="--threads" size="2" type="integer" value="2" min="1"
                    label="Threads number"
                    help="Default value is 2 threads. SPAN utilizes both multithreading and specialized processor extensions like SSE2, AVX, etc."/>
--- a/tool_dependencies.xml	Thu Nov 22 12:21:15 2018 -0500
+++ b/tool_dependencies.xml	Wed Dec 12 04:11:14 2018 -0500
@@ -4,17 +4,17 @@
     Package for downloading latest successful development tools.
     https://galaxyproject.org/toolshed/tool-dependencies-tag-sets/
     -->
-    <package name="package_span_jar" version="0.8.0.4533" prior_installation_required="True">
+    <package name="package_span_jar" version="0.9.0.4581" prior_installation_required="True">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">https://download.jetbrains.com/biolabs/span/span-0.8.0.4533.jar</action>
+                <action type="download_by_url">https://download.jetbrains.com/biolabs/span/span-0.9.0.4581.jar</action>
                 <action type="move_directory_files">
                     <source_directory>.</source_directory>
                     <destination_directory>$INSTALL_DIR/</destination_directory>
                 </action>
                 <!-- Set environment variable SPAN_JAR so Python script knows where to look -->
                 <action type="set_environment">
-                    <environment_variable name="SPAN_JAR" action="set_to">$INSTALL_DIR/span-0.8.0.4533.jar</environment_variable>
+                    <environment_variable name="SPAN_JAR" action="set_to">$INSTALL_DIR/span-0.9.0.4581.jar</environment_variable>
                 </action>
             </actions>
         </install>