Mercurial > repos > jetbrains > zinbra
comparison zinbra.xml @ 0:5f97f28e65ca
Initial commit
| author | Oleg Shpynov <oleg.shpynov@gmail.com> |
|---|---|
| date | Tue, 27 Oct 2015 14:20:42 +0300 |
| parents | |
| children | 8cbb06892b62 |
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| -1:000000000000 | 0:5f97f28e65ca |
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| 1 <tool id="zinbra" name="Zinbra" version="0.0.1"> | |
| 2 <description>ChIP-Seq enrichment</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="0.0.1">epigenome</requirement> | |
| 5 </requirements> | |
| 6 <stdio> | |
| 7 <!-- Wrapper ensures anything other than zero is an error --> | |
| 8 <exit_code range="1:" /> | |
| 9 <exit_code range=":-1" /> | |
| 10 </stdio> | |
| 11 <command interpreter="python"> | |
| 12 zinbra.py "${genome}" "${bed}" "${bin}" "${fdr}" | |
| 13 </command> | |
| 14 <inputs> | |
| 15 <param name="bed" type="data" format="bed" label="Aligned reads" description="BED Aligned reads to process" /> | |
| 16 <param name="genome" type="genomebuild" label="Genome build" description="Genome build used for alignment" /> | |
| 17 <param name="bin" size="5" type="integer" value="200" label="Bin size" /> | |
| 18 <param name="fdr" size="5" type="float" value="0.0001" label="FDR" /> | |
| 19 </inputs> | |
| 20 <outputs> | |
| 21 <data name="result" format="bed" label="result.bed" /> | |
| 22 </outputs> | |
| 23 <help> | |
| 24 Zinbra is a tool for analyzing and comparing ChIP-Seq data using Zero Inflated Negative Binomial Restricted Algorithm. | |
| 25 </help> | |
| 26 </tool> |