annotate blosum4galaxy/Blosum.xml @ 1:b2469e2b37be draft

Uploaded
author jfb
date Thu, 25 Oct 2018 15:44:31 -0400
parents 18232eedb89c
children 0c6cffd4393f
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
18232eedb89c Uploaded
jfb
parents:
diff changeset
1 <tool id="blosum" name="Blosum" version="0.6.0">
1
b2469e2b37be Uploaded
jfb
parents: 0
diff changeset
2 <description>Scores peptides for their terbium binding capability</description>
0
18232eedb89c Uploaded
jfb
parents:
diff changeset
3 <requirements>
18232eedb89c Uploaded
jfb
parents:
diff changeset
4 <requirement type="package">openjdk</requirement>
18232eedb89c Uploaded
jfb
parents:
diff changeset
5 </requirements>
18232eedb89c Uploaded
jfb
parents:
diff changeset
6 <command detect_errors="aggressive"><![CDATA[
18232eedb89c Uploaded
jfb
parents:
diff changeset
7 java -Djava.awt.headless=true -jar '$__tool_directory__/blosum2.jar'
18232eedb89c Uploaded
jfb
parents:
diff changeset
8 ]]></command>
18232eedb89c Uploaded
jfb
parents:
diff changeset
9 <inputs>
1
b2469e2b37be Uploaded
jfb
parents: 0
diff changeset
10 <param format="csv" name="INPUT.csv" type="data" label="Peptide Sequences"/>
0
18232eedb89c Uploaded
jfb
parents:
diff changeset
11 </inputs>
18232eedb89c Uploaded
jfb
parents:
diff changeset
12 <outputs>
1
b2469e2b37be Uploaded
jfb
parents: 0
diff changeset
13 <data format="csv" name="output.csv" from_work_dir="BlosumOutput.csv" label="peptides with scores.csv"/>
0
18232eedb89c Uploaded
jfb
parents:
diff changeset
14 </outputs>
18232eedb89c Uploaded
jfb
parents:
diff changeset
15 <tests>
18232eedb89c Uploaded
jfb
parents:
diff changeset
16 <test>
18232eedb89c Uploaded
jfb
parents:
diff changeset
17 </test>
18232eedb89c Uploaded
jfb
parents:
diff changeset
18 </tests>
18232eedb89c Uploaded
jfb
parents:
diff changeset
19
18232eedb89c Uploaded
jfb
parents:
diff changeset
20
18232eedb89c Uploaded
jfb
parents:
diff changeset
21 <help><![CDATA[
18232eedb89c Uploaded
jfb
parents:
diff changeset
22 This does a thing
18232eedb89c Uploaded
jfb
parents:
diff changeset
23 ]]></help>
18232eedb89c Uploaded
jfb
parents:
diff changeset
24 <citations>
18232eedb89c Uploaded
jfb
parents:
diff changeset
25 <citation type="doi">10.1021/ja507164a</citation>
18232eedb89c Uploaded
jfb
parents:
diff changeset
26 </citations>
18232eedb89c Uploaded
jfb
parents:
diff changeset
27 </tool>
18232eedb89c Uploaded
jfb
parents:
diff changeset
28