Mercurial > repos > jfb > difference_finder
comparison all stuff/differenceFinder.xml @ 2:beba4066121e draft
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author | jfb |
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date | Wed, 16 Jan 2019 14:33:39 -0500 |
parents | 23eea82f5192 |
children | dff99bed3f56 |
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1:110a74dff8e1 | 2:beba4066121e |
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11 | 11 |
12 Rscript '$__tool_directory__/Difference finderMADE 7 TO 7 1-15-2019.R' | 12 Rscript '$__tool_directory__/Difference finderMADE 7 TO 7 1-15-2019.R' |
13 ]]></command> | 13 ]]></command> |
14 <inputs> | 14 <inputs> |
15 <param format="csv" name="input1" type="data" label="First Substrate Set"/> | 15 <param format="csv" name="input1" type="data" label="First Substrate Set"/> |
16 <param format="csv" name="input2" type="data" label="First Substrate Background Frequency"/> | 16 <param format="csv" name="input2" type="data" label="First Substrate Background Frequency"/> |
17 <param format="csv" name="input3" type="data" label="Second Substrate Set"/> | 17 <param format="csv" name="input3" type="data" label="Second Substrate Set"/> |
18 <param format="csv" name="input4" type="data" label="Second Substrate Background Frequency"/> | 18 <param format="csv" name="input4" type="data" label="Second Substrate Background Frequency"/> |
19 <param name="outGroup" type="text" value="kinase" label="Kinase Name"/> | 19 <param name="outGroup" type="text" value="kinase" label="Kinase Name"/> |
20 </inputs> | 20 </inputs> |
21 <outputs> | 21 <outputs> |
22 <data format="csv" name="substrates1" from_work_dir="1R1 substrates.csv" label="${outGroup}_First_Unshared_Substrates.csv"/> | 22 <data format="csv" name="substrates1" from_work_dir="1RS.csv" label="${outGroup}_First_Unshared_Substrates.csv"/> |
23 <data format="csv" name="SBF1" from_work_dir="1R1 SBF.csv" label="${outGroup}_First_Unshared_SBF.csv"/> | 23 <data format="csv" name="SBF1" from_work_dir="1RSBF.csv" label="${outGroup}_First_Unshared_SBF.csv"/> |
24 | 24 <data format="csv" name="substrates2" from_work_dir="2RS.csv" label="${outGroup}_Second_Unshared_Substrates.csv"/> |
25 <data format="csv" name="substrates2" from_work_dir="1R2 subs.csv" label="${outGroup}_Second_Unshared_Substrates.csv"/> | 25 <data format="csv" name="SBF2" from_work_dir="2RSBF.csv" label="${outGroup}_Second_Unshared_SubstratesSBF.csv"/> |
26 <data format="csv" name="SBF2" from_work_dir="1R2 SBf.csv" label="${outGroup}_Second_Unshared_SubstratesSBF.csv"/> | |
27 </outputs> | 26 </outputs> |
28 <tests> | 27 <tests> |
29 <test> | 28 <test> |
30 <param name="input1.csv" ftype="csv" value="input1.csv"/> | 29 <param name="input1.csv" ftype="csv" value="input1.csv"/> |
31 <param name="positives" ftype="csv" value="substrates.csv"/> | 30 <param name="positives" ftype="csv" value="substrates.csv"/> |