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author jiechenable1987
date Fri, 24 Feb 2012 17:42:16 -0500
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1 HumMeth27QCReport is a tool for quality control and preprocessing of Illumina's Infinium BeadChip methylation assays. The automated analysis pipeline comprises data import, normalization, quality diagnostics and data export.
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3 This requires:
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5 * Perl
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6 * Python 2
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7 * R (≥ 2.13.0)
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8 * The following R packages: methylumi, lumi, IlluminaHumanMethylation27k.db, IlluminaHumanMethylation450k.db, amap, Hmisc, gplots, plotrix, WriteXLS, tcltk2, AnnotationDbi (≥ 0.0.89), Biobase (≥ 1.15.29)