diff cpo_rgi.xml @ 1:fea89c4d5227 draft

Uploaded
author jjjjia
date Thu, 16 Aug 2018 19:27:05 -0400
parents
children 698579246d0d
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+++ b/cpo_rgi.xml	Thu Aug 16 19:27:05 2018 -0400
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+<tool id="rgi" name="rgi" version="4.0.3">
+    <requirements>
+        <requirement type="package" version="4.0.3">rgi</requirement>
+		<requirement type="package" version="2.7">python</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        rgi load -i $__tool_directory__/card202.json --local && rgi main -t contig -a BLAST -i $input -o rgiResult -n "\${GALAXY_SLOTS:-4}" --local --clean 
+    ]]></command>
+
+    <inputs>
+        <param type="data" name="input" format="fasta" />
+    </inputs>
+    <outputs>
+		<data name="rgiResultTsv" format="tabular" from_work_dir="rgiResult.txt"/>
+    </outputs>
+    <help>
+		runs rgi
+	</help>
+	<citations>
+	<citation type="bibtex">
+@misc{cpo,
+  author = {j, j},
+  year = {2018},
+  title = {cpo_prediction},
+  publisher = {j},
+  journal = {j of j},
+  url = {https://bfjia.net,
+}</citation>
+    </citations>
+</tool>
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