Mercurial > repos > jjkoehorst > sapp
annotate conversion/gbk2rdf/tool_dependencies.xml @ 30:0a947cb25a3d draft
Uploaded
author | jjkoehorst |
---|---|
date | Wed, 29 Jun 2016 01:34:59 -0400 |
parents | dd59731d50b5 |
children |
rev | line source |
---|---|
29
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
1 <?xml version="1.0"?> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
2 <tool_dependency> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
3 <package name="zlib" version="1.2.8"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
4 <repository name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" /> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
5 </package> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
6 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
7 <package name="readline" version="6.2"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
8 <repository name="package_readline_6_2" owner="iuc" prior_installation_required="True" /> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
9 </package> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
10 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
11 <package name="bzlib" version="1.0.6"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
12 <repository name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" /> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
13 </package> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
14 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
15 <package name="xz" version="5.0.5"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
16 <repository name="package_xz_5_0_5" owner="iuc" prior_installation_required="True" /> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
17 </package> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
18 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
19 <package name="openssl" version="1.0.1"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
20 <repository name="package_openssl_1_0" owner="iuc" prior_installation_required="True" /> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
21 </package> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
22 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
23 <package name="sqlite" version="3.8.3"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
24 <repository name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" /> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
25 </package> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
26 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
27 <package name="gdbm" version="1.11"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
28 <repository name="package_gdbm_1_11" owner="iuc" prior_installation_required="True" /> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
29 </package> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
30 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
31 <package name="ncurses" version="5.9"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
32 <repository name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" /> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
33 </package> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
34 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
35 <package name="python" version="3.4"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
36 <install version="1.0"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
37 <actions> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
38 <action type="download_by_url">https://www.python.org/ftp/python/3.4.1/Python-3.4.1.tgz</action> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
39 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
40 <action type="set_environment_for_install"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
41 <repository name="package_zlib_1_2_8" owner="iuc"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
42 <package name="zlib" version="1.2.8" /> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
43 </repository> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
44 <repository name="package_readline_6_2" owner="iuc"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
45 <package name="readline" version="6.2" /> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
46 </repository> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
47 <repository name="package_bzlib_1_0" owner="iuc"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
48 <package name="bzlib" version="1.0.6" /> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
49 </repository> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
50 <repository name="package_xz_5_0_5" owner="iuc"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
51 <package name="xz" version="5.0.5" /> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
52 </repository> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
53 <repository name="package_openssl_1_0" owner="iuc"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
54 <package name="openssl" version="1.0.1" /> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
55 </repository> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
56 <repository name="package_sqlite_3_8_3" owner="iuc"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
57 <package name="sqlite" version="3.8.3" /> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
58 </repository> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
59 <repository name="package_gdbm_1_11" owner="iuc"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
60 <package name="gdbm" version="1.11" /> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
61 </repository> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
62 <repository name="package_ncurses_5_9" owner="iuc"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
63 <package name="ncurses" version="5.9" /> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
64 </repository> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
65 </action> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
66 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
67 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
68 <action type="autoconf" /> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
69 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
70 <action type="download_file">https://bitbucket.org/pypa/setuptools/get/5.2.tar.bz2</action> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
71 <action type="shell_command">tar -xjf 5.2.tar.bz2</action> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
72 <action type="change_directory">pypa-setuptools-f493e6c4ffd8</action> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
73 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
74 <action type="shell_command">export PATH=$PATH:$INSTALL_DIR/bin && |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
75 export PYTHONHOME=$INSTALL_DIR && |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
76 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR && |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
77 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python3.4/site-packages/ && |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
78 export PKG_CONFIG_PATH=$PKG_CONFIG_PATH:$INSTALL_DIR/lib/pkgconfig && |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
79 $INSTALL_DIR/bin/python3 setup.py install --prefix=$INSTALL_DIR</action> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
80 <action type="set_environment"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
81 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
82 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
83 <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
84 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
85 </action> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
86 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
87 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
88 </actions> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
89 </install> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
90 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
91 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
92 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
93 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
94 <package name="biopython" version="1.61"> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
95 <repository changeset_revision="ae9dda584395" name="package_biopython_1_61" owner="biopython" toolshed="https://toolshed.g2.bx.psu.edu" /> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
96 </package> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
97 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
98 <readme> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
99 The Python programming language version 3.4. hopefully incombination with python3.4 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
100 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
101 http://www.python.org |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
102 </readme> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
103 |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
104 </package> |
dd59731d50b5
Biopython and python3.4 inclusion test.
Jasper Koehorst <jasperkoehorst@gmail.com>
parents:
diff
changeset
|
105 </tool_dependency> |