annotate conversion/gbk2rdf/tool_dependencies.xml @ 30:0a947cb25a3d draft

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author jjkoehorst
date Wed, 29 Jun 2016 01:34:59 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="zlib" version="1.2.8">
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4 <repository name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" />
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5 </package>
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6
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7 <package name="readline" version="6.2">
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8 <repository name="package_readline_6_2" owner="iuc" prior_installation_required="True" />
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9 </package>
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10
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11 <package name="bzlib" version="1.0.6">
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12 <repository name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" />
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13 </package>
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14
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15 <package name="xz" version="5.0.5">
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16 <repository name="package_xz_5_0_5" owner="iuc" prior_installation_required="True" />
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17 </package>
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18
dd59731d50b5 Biopython and python3.4 inclusion test.
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19 <package name="openssl" version="1.0.1">
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20 <repository name="package_openssl_1_0" owner="iuc" prior_installation_required="True" />
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21 </package>
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22
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23 <package name="sqlite" version="3.8.3">
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24 <repository name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" />
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25 </package>
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26
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27 <package name="gdbm" version="1.11">
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28 <repository name="package_gdbm_1_11" owner="iuc" prior_installation_required="True" />
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29 </package>
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30
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31 <package name="ncurses" version="5.9">
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32 <repository name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" />
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33 </package>
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34
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35 <package name="python" version="3.4">
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36 <install version="1.0">
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37 <actions>
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38 <action type="download_by_url">https://www.python.org/ftp/python/3.4.1/Python-3.4.1.tgz</action>
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39
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40 <action type="set_environment_for_install">
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41 <repository name="package_zlib_1_2_8" owner="iuc">
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42 <package name="zlib" version="1.2.8" />
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43 </repository>
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44 <repository name="package_readline_6_2" owner="iuc">
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45 <package name="readline" version="6.2" />
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46 </repository>
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47 <repository name="package_bzlib_1_0" owner="iuc">
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48 <package name="bzlib" version="1.0.6" />
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49 </repository>
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50 <repository name="package_xz_5_0_5" owner="iuc">
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51 <package name="xz" version="5.0.5" />
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52 </repository>
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53 <repository name="package_openssl_1_0" owner="iuc">
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54 <package name="openssl" version="1.0.1" />
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55 </repository>
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56 <repository name="package_sqlite_3_8_3" owner="iuc">
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57 <package name="sqlite" version="3.8.3" />
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58 </repository>
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59 <repository name="package_gdbm_1_11" owner="iuc">
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60 <package name="gdbm" version="1.11" />
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61 </repository>
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62 <repository name="package_ncurses_5_9" owner="iuc">
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63 <package name="ncurses" version="5.9" />
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64 </repository>
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65 </action>
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66
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67
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68 <action type="autoconf" />
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69
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70 <action type="download_file">https://bitbucket.org/pypa/setuptools/get/5.2.tar.bz2</action>
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71 <action type="shell_command">tar -xjf 5.2.tar.bz2</action>
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72 <action type="change_directory">pypa-setuptools-f493e6c4ffd8</action>
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73
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74 <action type="shell_command">export PATH=$PATH:$INSTALL_DIR/bin &amp;&amp;
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75 export PYTHONHOME=$INSTALL_DIR &amp;&amp;
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76 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR &amp;&amp;
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77 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python3.4/site-packages/ &amp;&amp;
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78 export PKG_CONFIG_PATH=$PKG_CONFIG_PATH:$INSTALL_DIR/lib/pkgconfig &amp;&amp;
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79 $INSTALL_DIR/bin/python3 setup.py install --prefix=$INSTALL_DIR</action>
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80 <action type="set_environment">
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81 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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82 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
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83 <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable>
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84 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable>
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85 </action>
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86
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87
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88 </actions>
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89 </install>
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90
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91
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92
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93
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94 <package name="biopython" version="1.61">
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95 <repository changeset_revision="ae9dda584395" name="package_biopython_1_61" owner="biopython" toolshed="https://toolshed.g2.bx.psu.edu" />
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96 </package>
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97
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98 <readme>
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99 The Python programming language version 3.4. hopefully incombination with python3.4
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100
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101 http://www.python.org
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102 </readme>
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103
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104 </package>
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105 </tool_dependency>