Mercurial > repos > jjkoehorst > sapp

annotate sappDocker/pathwayAnalysis.xml @ 32:7b519ee3ea3b draft

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author jjkoehorst
date Wed, 29 Jun 2016 01:37:28 -0400
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1 <tool id="DPathway" name="Pathway analysis" version="0.1">
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2 <description/>
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3 <command interpreter="docker">java -jar /pathwayanalysis/target/pathwayAnalysis-0.0.1-SNAPSHOT-jar-with-dependencies.jar -input $input -output $output -format TURTLE</command>
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4 <inputs>
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5 <param format="ttl" label="Annotated RDF file" name="input" type="data"/>
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6 </inputs>
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7 <outputs>
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8 <data format="tsv" label="PathwayAnalysis: ${input.name}" name="output"/>
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9 </outputs>
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10 <help>Pathway overview information for MetaCyc and KEGG
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11 </help>
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12 </tool>