Mercurial > repos > jjkoehorst > sapp

annotate rnaseq/cutadapt/test-data/cf_maf2fasta_new.dat @ 11:a712b378e090

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cutadapt added
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 16:33:42 +0100
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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11
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
1 >hg17.chr7(+):127471195-127471526|sequence_index=0|block_index=0|species=hg17|hg17_0_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
2 gtttgccatcttttgctgctctagggaatccagcagctgtcaccatgtaaacaagcccaggctagaccaGTTACCCTCATC---ATCTTAGCTGATAGCCAGCCAGCCACCACAGGCAtgagtcaggccatattgctggacccacagaattatgagctaaataaatagtcttgggttaagccactaagttttaggcatagtgtgttatgtaTCTCACAAACATATAAGACTGTGTGTTTGTTGACTGGAGGAAGAGATGCTATAAAGACCACCTTTTAAAACTTCCCAAATACTGCCACTGATGTCCTGATGGAGG-------------------------------------------------------TATGAA---------AACATCCACTAA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
3 >panTro1.chr6(+):129885076-129885407|sequence_index=0|block_index=0|species=panTro1|panTro1_0_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
4 gtttgccatcttttgctgctcttgggaatccagcagctgtcaccatgtaaacaagcccaggctagaccaGTTACCCTCATC---ATCTTAGCTGATAGCCAGCCAGCCACCACAGGCAtgagtcaggccatattgctggacccacagaattatgagctaaataaatagtcttgggttaagccactaagttttaggcatagtgtgttatgtaTCTCACAAACATATAAGACTGTGTGTTTGTTGACTGGAGGAAGAGATGCTATAAAGACCACCTTTTGAAACTTCCCAAATACTGCCACTGATGTCCTGATGGAGG-------------------------------------------------------TATGAA---------AACATCCACTAA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
5 >rheMac2.chr3(+):165787989-165788319|sequence_index=0|block_index=0|species=rheMac2|rheMac2_0_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
6 gcttgccatcttttgatgctcttgggaatccagcagctgtcaccat-taaacaagcccaggctagaccaGTTACCCTCATC---ATCTTAGCTGATAGCCAGCCAGCCACCATAGGCAtgagtcaggccatagtgctggacccacagaattatgagctaaataagtagtgttgggttaagtcactaagttttaggcatagtgtgttatgtagcTCACAAACATATAAGACTGTGTGTTTTTTGACTGGAGGAAGAGATGCCATAAAGACCACCTTTTGAAACTTCTCAAATACTGCCATTGATGTGCTGATGGAGG-------------------------------------------------------TATGAA---------AACATCCACTAA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
7 >rn3.chr4(+):56178191-56178473|sequence_index=0|block_index=0|species=rn3|rn3_0_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
8 CTTCACTCTCATTTGCTGTT----------------CTGTCACTATGGAGACAAACACAGGCTAGCCCAGTTACTATCTTGATCACAGCAGCTGT----CAGCTAGCTGCCACTCACAGGAATAAGGCCATACCATT-GATCCACTGAACCTTGATCTAGGAATTTGGC----------------------TGGGGCCAGTTTGCGGTGTCACTCATGA--CTCTAAGATTGTGTGTTTG----CTCCAGGAAGAGACGGCAAGAGGATTACCTTTAAAAGGTTCGG-AGTCTAGCTGTAGACAGCCCAATGGG---------------------------------------------------------TATAAC---------AATACTCACTAA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
9 >mm7.chr6(+):28984529-28984886|sequence_index=0|block_index=0|species=mm7|mm7_0_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
10 CTCCACTCTCGTTTGCTGTT----------------CTGTCACCATGGAAACAAACG-AGGGTGGTCCAGTTACTATCTTG---ACTGCAGCTGG----CAGTCAGTTGCCACT--CAGGAATAAGGCTATGCCATT-GATCCACTGAACCGTGATCTGGAAACCTGGCTGTTGTTT-------CAAGCCTTGGGGCCAGTTTGCGGTGTTACTCATGA--CTCTAAGATCGTGTGCTTG----CTGCAGGAAGAGACAGCAAGGGGGTTACATTTAAAAAGCCCCC-AGTTTAGCTATAGGCAGGCCAACAGGTGTAAAAATACTCACTAGTAATGGGCTGAACTCATGGAGGTAGCATTAGTGAGACACTGTAACTGTTTTTTTAAAAATCACTAA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
11
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
12 >hg17.chr7(+):127471526-127471584|sequence_index=0|block_index=1|species=hg17|hg17_1_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
13 AATTTGTGGTTTATTCATTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
14 >mm7.chr6(+):28984886-28984940|sequence_index=0|block_index=1|species=mm7|mm7_1_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
15 ----AACGTTTCATTGATTGCTCATCATTTAAAAAAAGAAATTCCTCAGTGGAAGAGG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
16 >rheMac2.chr3(+):165788319-165788377|sequence_index=0|block_index=1|species=rheMac2|rheMac2_1_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
17 AATTTGTGGTTTATTTATTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
18 >panTro1.chr6(+):129885407-129885465|sequence_index=0|block_index=1|species=panTro1|panTro1_1_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
19 AATTTGTGGTTTATTCGTTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
20
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
21 >hg17.chr7(+):127471584-127471688|sequence_index=0|block_index=2|species=hg17|hg17_2_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
22 GAGATATTT-GGggaaatttt-gtatagactagctt--tcacgatgttagggaattattattgtgtgataatggtcttgcagttac-acagaaattcttcctta-ttttt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
23 >panTro1.chr6(+):129885465-129885569|sequence_index=0|block_index=2|species=panTro1|panTro1_2_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
24 GAGACATTT-GGggaaatttt-gtatagactagctt--tcacgatgttagggagttattattgtgtgataatggtcttgcagttac-acagaaattcttcctta-ttttt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
25 >rheMac2.chr3(+):165788377-165788482|sequence_index=0|block_index=2|species=rheMac2|rheMac2_2_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
26 GAGATATTT-GGggaaatttg-gtatagactagctt--tcatgatgtaagggagttatttttgtgtgataatggccctacagttac-acagaaattcttccttatttttt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
27 >canFam2.chr14(-):11090703-11090811|sequence_index=0|block_index=2|species=canFam2|canFam2_2_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
28 gagatattt-gggggaatttgaatgtagtgttgctcttttgtgatgctaagaaattataattgtctgatgatagtctcgtggttatgggggaaatgcttcctta-ttttt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
29 >bosTau2.chr4(-):50243931-50244034|sequence_index=0|block_index=2|species=bosTau2|bosTau2_2_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
30 -agacattg-ggtaaaattcaaatgcagactagctc----atgatgttaaagaattactcttgtgtggtaatggtcttgtgatagagatagaaatgcttcctta-ttttt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
31 >rn3.chr4(+):56182200-56182295|sequence_index=0|block_index=2|species=rn3|rn3_2_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
32 ----TATTTGGGGGAAATATG-ATGTGCA----CTT--CCATGATCTTAAAGAATTGCTACTGTTTGATAGTGATCTTATGGTTAA-ATAAAAAAAAT--CTTA-GTTGT
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
33 >dasNov1.scaffold_256527(+):298-392|sequence_index=0|block_index=2|species=dasNov1|dasNov1_2_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
34 GAGACATTT-GGAGAAATTTG-----------Aatt--tcatgatgttaaggaattacttttgtatgatgatggtcttgtggctat-gtagaatttcttccgtg-tttta
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
35
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
36 >hg17.chr7(+):127471688-127471871|sequence_index=0|block_index=3|species=hg17|hg17_3_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
37 tgggaagcaccaaagta-------gggataaaatgtcatgatgtgtgcaatacactttaaaatgtttttgccaaaa----------taattaa-------------------------tgaagc--aaatatg---gaaaataataattattaaatctaggt-----gatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaatttttcattta--------------------------aaaa-
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
38 >panTro1.chr6(+):129885569-129885752|sequence_index=0|block_index=3|species=panTro1|panTro1_3_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
39 tgggaaacaccaaagta-------gggataaaatgtcatgatgtgtgcaatacgctttaaaatatttttgccaaaa----------taattaa-------------------------tgaagc--aaatatg---gaaaataataattattaaatctaggt-----gatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaaattttcattta--------------------------aaaa-
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
40 >rheMac2.chr3(+):165788482-165788684|sequence_index=0|block_index=3|species=rheMac2|rheMac2_3_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
41 tgggaagcacaaaagta-------gggataaaatgtcatgatgtgtacaatatgctttaaaatatttttgccaaaa----------taattaa-------------------------tgaagc--aaatatg---gaaaataataactgttaaatctaggt-----gttgggtatattgcagttcattatgttattgcacacttttctgtgtgtttaaaattttcatttaaaaatatgttttaaaaatg-------aaaa-
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
42 >rn3.chr4(+):56182295-56182489|sequence_index=0|block_index=3|species=rn3|rn3_3_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
43 TAGAAAATACTCAAATATTTAGGGGCGTGACAATGTCACAGTGTCTGCAATTTGCTTTAAAGATTTTT-----AAA----------TATTTAAAAAAGTTTTAATAATTTTGAAAAACTGAAGCTACACTATG---GGAAGTGGTAATTGTTACATATGGGT-----AATAAGTAT-----AATTCGTTATATTAT-------TTTTC------TTAGAATTTTTCATTTG--------------------------AAAA-
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
44 >bosTau2.chr4(-):50243792-50243930|sequence_index=0|block_index=3|species=bosTau2|bosTau2_3_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
45 agataaacacttaagtattta---aggatgaaacgccctgatgtttgtaatttgctttagaatattttagccaaaa----------gaattaa-------------------------tgatgc--aaatatg--caaaaagagta--cgttaaacctaa-----------------------------------------------------atttgCGATTttcattta--------------------------aaaa-
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
46 >canFam2.chr14(-):11090345-11090505|sequence_index=0|block_index=3|species=canFam2|canFam2_3_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
47 agacacaaactgaagtattta---aggatgaaatgtcatgatgtttgcaattggctttaaaatattttagccaaaa-----------agtaaa-------------------------tgaagc--AAATATG--GGAAGACAATAATCATTAAATCTAGGT-----GATGCATAC---------------------------TTTTCCATATGTTTGAAATTTTCATTTA--------------------------AAAA-
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
48 >dasNov1.scaffold_256527(+):393-625|sequence_index=0|block_index=3|species=dasNov1|dasNov1_3_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
49 agacgcatgctgaagcatgta---aggataaaatgtcgtggtgtttgtaatttattctaaaacattttagccaaaaacaaataaataaataaa-------------------------tgaagc--aaatatgggggaaatgtttaattgttaaatctagatttaacacggtatataccgtgcttcattatactagtctctacttttccatgtgtttgaaattttCATTAAAATGTTTGTTTGTTGTCTGTTTTAATGAAAT
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
50
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
51 >hg17.chr7(+):127471871-127471910|sequence_index=0|block_index=4|species=hg17|hg17_4_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
52 actttgagctagacaccaggctatgagcta-ggagcatag
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
53 >rheMac2.chr3(+):165788684-165788723|sequence_index=0|block_index=4|species=rheMac2|rheMac2_4_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
54 actttgagctagataccaggttatgagcta-ggagcatag
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
55 >panTro1.chr6(+):129885752-129885791|sequence_index=0|block_index=4|species=panTro1|panTro1_4_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
56 actttgagctagacaccaggctatgagcta-ggagcatag
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
57 >bosTau2.chr4(-):50243734-50243773|sequence_index=0|block_index=4|species=bosTau2|bosTau2_4_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
58 tcttcgtgcaacgcacggggctatcaatgt-gggatacag
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
59 >canFam2.chr14(-):11090081-11090120|sequence_index=0|block_index=4|species=canFam2|canFam2_4_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
60 ACATCAtgctagatcctggactatgagctg-ggtatatag
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
61 >dasNov1.scaffold_256527(+):625-665|sequence_index=0|block_index=4|species=dasNov1|dasNov1_4_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
62 CCTTTGTGCTAGCCACTGGGATGAAAGCTAGGGAACACAG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
63
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
64 >hg17.chr7(+):127471910-127472074|sequence_index=0|block_index=5|species=hg17|hg17_5_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
65 caatgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa-ctc-aaagaatgcacattctCTG-GGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACCTG-TGTGATCCTGGCTTTTCCTGTTCCCTCCG---CATCATCACTGCAGGTGTGTTTTCCCAAG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
66 >panTro1.chr6(+):129885791-129885955|sequence_index=0|block_index=5|species=panTro1|panTro1_5_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
67 caatgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa-ctc-aaagaatgcacattctCTG-GGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACATG-TGTGATCCTGGCTTTTCCTGTTCCCTCTG---CATCATCACTGCAGGTGTATTTTCCCAAG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
68 >rheMac2.chr3(+):165788723-165788885|sequence_index=0|block_index=5|species=rheMac2|rheMac2_5_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
69 caatgaccaa----------------------------------------------------------------------------------------------atagacccctaccga-ctc-aaagaatgtacattctTTG-GGAAACATGTTTCCATCAGAAAATCTCAAATGCAATGTGACTGGGGTCTCCAGGACCTG-TGTGAGCCTGGCTTTTCCTGTTCCCTCCA---CATCATCACTGCAGGTGTATTTTCCC--G
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
70 >mm7.chr6(+):28990714-28990875|sequence_index=0|block_index=5|species=mm7|mm7_5_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
71 caaaaaccaa------------------------------------------------------------------------------------------------aaaaACCTATAGC-CTC-ACAGGGTGGGTTGTCTTTG-AGGAACATGCATCCGCTAGAAAGTCCCAAGTACACTATGACAGTTG--CCCAGGCCCCGCCTTAAACCTGGTTTTCCTGGTTTCTTTCA---CATCATTACCACGAATATATTTCCTCAAG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
72 >rn3.chr4(+):56183448-56183705|sequence_index=0|block_index=5|species=rn3|rn3_5_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
73 --ATGACCAATATACACTGTTTACATGTATAGCATTGTGAATGGAGACATAAAAAGATAATCTAGCTTTGTGCTAGGTAGGTGCTGAGCTCTTAACAGTGCTGGGCAGAAACCTATAAC-CTC-ACAGGGTGGGTTGTCTTTG-AGGAGCGTGCTAACCCTAGGAAGTCTCAAATACAATGTGATGGTTGCCCCCAGGCACCACCTTGAACCTGGTCTTCCTGGTTTCTTTCA---CACCATTACCACAAATACATTTTCTCAGG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
74 >bosTau2.chr4(-):50243566-50243734|sequence_index=0|block_index=5|species=bosTau2|bosTau2_5_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
75 atgtgaacaa---------------------------------------------------------------------------------------------aacggacccgtgtgggactcggcggagcacacagattttgcgggagCACGTTCCCGTTAGGAAGTCTCTGATGCAATACGACCGGTGCCTTCAGGACCTG-TG--AGGCTGACTTTCCTTA-CCCCTCCACACCATCATCAAGGCAGGTGTGATTTTCCAGG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
76 >canFam2.chr14(-):11089913-11090081|sequence_index=0|block_index=5|species=canFam2|canFam2_5_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
77 cagtgaacaa---------------------------------------------------------------------------------------------aacagagccctgcagt-cttgatggagcacacaacctttg-gggaaCATGTTTCCATAAGAAAGTCTCCAATGTGATCTGA-TGGTGCCGCCAGGACCTA-TGTCAGCCTACCGTTCCATGTCCCCTCCACACCATCATCACTGCAGGTGTGTTTTCCCACA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
78 >dasNov1.scaffold_256527(+):665-786|sequence_index=0|block_index=5|species=dasNov1|dasNov1_5_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
79 CAGTGAGCAA-----------------------------------------------------------------------------------------------CAGCCTGGCTCCGT-CC--GGGGGCCGCTCAGCAGCTC-GGGAGCGTGGAGACG---GGAAGTCTGTCACGCGATGCG-----------CTGGGCCCG------------CTGTTCCCGCCCCCCTCC---CCCC----------------TTTCCCAAG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
80
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
81 >hg17.chr7(+):127472074-127472258|sequence_index=0|block_index=6|species=hg17|hg17_6_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
82 TTTTAAA------CATTTACCTTCCCAGTGGCCTTGCGTCTAGAGGAATCCCTGTATAGTGGT-ACATGAATATAACACATAACAAA-AATCATCTCTATGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaatttt-ccc-tgggcacccatgtgttcttggcactggaaaagtaccgggactgaaacagtt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
83 >panTro1.chr6(+):129885955-129886139|sequence_index=0|block_index=6|species=panTro1|panTro1_6_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
84 TTTTAAA------CATTTACCTTCCCAGTGGCCTTGCGTCTAGAGGAATCCCTGTATAGTGGT-ACATGAATATAACACATAACAAA-AATCATCTCTATGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaatttt-tcc-tgggcacccatgtgttcttggcactggaaaagtaccgggactgaaacagtt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
85 >rheMac2.chr3(+):165788885-165789069|sequence_index=0|block_index=6|species=rheMac2|rheMac2_6_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
86 TTTTAAA------CATTTACTCTCCCAGTAGCCTTGCATCTCGAGGAATCCCTGTATAGTGGT-ACATGAATATAACACATAACAAA-AATCATCTGTACGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaatttt-tcc-tgggcacccctgtgttcttggcactggaaaagtaccaggacttaaatagta
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
87 >mm7.chr6(+):28990875-28991025|sequence_index=0|block_index=6|species=mm7|mm7_6_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
88 TTTAAAGAAAGTACCCCCTCCTTTCCAGT-GCCTCAAATCTAGAAGAATATTCATAGTGAAGT-GC------------------------ACAGCCGGGTGGTGCATGGTA-ATCTGGAAGTCACCTCTGCAAATCTT-TCC----------------TGTTGGTGCTGTGAAGGCACCAGGACTTCAAGAGTA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
89 >rn3.chr4(+):56183705-56183879|sequence_index=0|block_index=6|species=rn3|rn3_6_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
90 TTTAAAAGAAGT-CCCACTCCTTTCCAGT-GCCCTAGATCTAGAAGCACATTCATAATGATGT-ACAC-----TAACCC----------GACAGCTGTGTGGTATATGGTA-TCCCGGAAGTCACCTCAGCAAACCTT-TCCCGGGGAACCTACATGGTGTTGGTGCTGTGAAGGTACCAGGTTGTCAAGGGTA
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
91 >canFam2.chr14(-):11089743-11089913|sequence_index=0|block_index=6|species=canFam2|canFam2_6_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
92 TTTTAAA------TATCTGC-TTCCCGGTGGCCTTGAGTCTAGAGGAGTCCCCCCACTATGGTGGCACTAATACTGAAGGTCAGAAATAATCAGTTCTGTGGTGCATGTTGCCCCTGAGGTTCTGTTCGGGAAACTTC-TTC-TGAGCAC----ATGCACCTGGCACTGCAAACGTACCAGGA-----------
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
93 >dasNov1.scaffold_256527(+):786-964|sequence_index=0|block_index=6|species=dasNov1|dasNov1_6_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
94 TTTTAAA------AATTTACCTTCCCAGTGGCGGTGAATCCGGAGGAATACGGAAACTGGGGC-GCACTACCATGACACGTGTCAAA-AATCAGTTCCGTGGTCCGTGGAGGGCCTGGGGTTC------GAAAATCTTGTCC-CGAGCACCCCCGTGCGCCTGGCACCGCGACAGTGACAGGACTGAAGCGTG-
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
95
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
96 >hg17.chr7(+):127472258-127472280|sequence_index=0|block_index=7|species=hg17|hg17_7_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
97 gatggccca-atccctgtcctct-
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
98 >panTro1.chr6(+):129886139-129886161|sequence_index=0|block_index=7|species=panTro1|panTro1_7_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
99 gatggccca-atccctgtcctct-
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
100 >rheMac2.chr3(+):165789069-165789091|sequence_index=0|block_index=7|species=rheMac2|rheMac2_7_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
101 gatggccca-atccctgtcctct-
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
102 >mm7.chr6(+):28991025-28991048|sequence_index=0|block_index=7|species=mm7|mm7_7_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
103 AATGGCAGAGGGCTCTGTTCTCT-
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
104 >rn3.chr4(+):56183879-56183902|sequence_index=0|block_index=7|species=rn3|rn3_7_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
105 AATGGCAGAGGCCCCTGTTCTCT-
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
106 >canFam2.chr14(-):11089526-11089548|sequence_index=0|block_index=7|species=canFam2|canFam2_7_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
107 GGAGACTTG-ATGCCTGCCTTCC-
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
108 >dasNov1.scaffold_256527(+):964-987|sequence_index=0|block_index=7|species=dasNov1|dasNov1_7_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
109 GACGGCCAG-ACCTCTGCCCTCGG
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
110
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
111 >hg17.chr7(+):127472280-127472681|sequence_index=0|block_index=8|species=hg17|hg17_8_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
112 taaaacctaagggaggagaTGGAAAG-GGGCACCCAACCCAGACTGAGAGACAGGAATTAGCTGCAAGGGGAACTAGGAAAAGCTTCTTTA---AGGATG--GAGAGGCCCTA-GTGGAATGGGGAGATTCTTCCGGGAGAAGCGATGGATGCACAGTTGGGCATCCCCACAGACGGACTGGAAAGAAAAAAGGCCTGGAGGAATCA------ATGTGC-AATGTATGTGTGTTCCCTGGTTcaagggctgg-gaactttctcta--aagggccaggtagaaaacattttaggctttctaagccaagg---caaaattgaggat-attacatgggtacttatacaacaagaataaacaatt---tacacaa-ttttttgttgacagaattcaaaa---ctttat----agacac---agaaatgcaaatttcctgt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
113 >panTro1.chr6(+):129886161-129886562|sequence_index=0|block_index=8|species=panTro1|panTro1_8_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
114 taaaacctaagggaggagaTGGAAAG-GGGCACCCAACCCAGACTGAGAGACAGGAATTAGCTGCAAGGGGAACTAGGAAAAGCTTCTTTA---AGGATG--GAGAGACCCTA-GTGGAATGGGGAGATTCTTCCGGGAGAAGCGATGGATGCGCAGTTGGGCATCCCCACAGACGGACTGGAAAGAAAAAAGGCCTGGAGGAATCA------ATGTGC-AATGTATGTGTGTTCCCTGGTTcaagggctgg-gaactttctcta--aagggccaggtagaaaacattttaggctttctaagccaagg---caaaattgaggat-attacatgggtacttatacaacaagaataaacaatt---tacacaa-ttttttgttgacagaattcaaaa---ctttat----agacac---agaaatgtaaatttcctgt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
115 >rheMac2.chr3(+):165789091-165789492|sequence_index=0|block_index=8|species=rheMac2|rheMac2_8_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
116 taaaacctaatggaggagatggaATG-GGTCACCCAACCCGGACTGAGAGACAGGAATTAGCTGCAAGGGTAACCAGGACAAGCTTCTCTA---ATGATG--GAGAGACCCTA-GTGGAATGGGGAGATTCTTCTGGGAGAAGCGATGGATTCGTAGTTGGGCATCCCCACAGAGGGACTGGAAAGAAAAAAGACCTGGAGGAACCA------ATGTGC-AATGTATGTGTGTTTCCTGGTTcaagggctggcaaactttctcta--aagggccagatagaaaacattttaggctttgtaagccaagg---caaaatcgaggag-attacatgggtacttatacaacaagaataaacaatt---tccacaa--tttttattcacagaattcaaaa---ctttat----agacac---agaaatgtaaatttcctgt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
117 >rn3.chr4(+):56183902-56184219|sequence_index=0|block_index=8|species=rn3|rn3_8_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
118 ------------------------------------GTCCATAGTCAAAG------------------------------AAGCCTCTCAG---ATGGAG--AGCAGGGCCTATGCAAAAGAGGGGGCTTCTGTAGGCAGAAGGGATGGACTAGCCTCCGGACATAGCCATAGAGAGGCTGGCAGGACTGAGACCCAGGAGAAGCCAGCGCAGGTGTGCGGGCGTGTGTATATTTCATAGTTTGCAGGTTGG----------------------------CAAACAATTCCTGCTTTGCAGGCCAAGA---GGAAACTGAAGGTGACCCCGTGAGTGCTTAC---ACAAGAGAAAACAAG-------ACAA-TTTTTGGTTGACCAAATTCAGAA---CTTTATTTGAGGATGC---TAAAGTTTAAATTTCTTTT
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
119 >canFam2.chr14(-):11089143-11089523|sequence_index=0|block_index=8|species=canFam2|canFam2_8_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
120 TACAGCCTGTGGGCAGAGGTGGGAAGAGGTCACGCAAGCCAGTTGGAATGAGGGGAGTTGGCTGGAAAGGTGACCAGGACAAGCTACTTCAACCAGGAAG--AAGAGACCCCG-GTG----------------CTTGGAGAAGGCCTGATTGAGCAGTCCTGCATGCCCGCCCAC-GACTGGCAGGAATAAAGACCCAGAAGAGCTA------ACGTGC-AATGTA------TTTTCTAGTTCCAgggttggcaaactttctctct-aagggtgggatgataaacattttaggcttttcagaccaaga---ggcgacatcagag-ggtatgtaggt---------acaagagggaaaagttgcccccggaa-ttttttg--gataaaattcaaaa---ctttacttagggatgc---caaaatgtaaacttcatat
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
121 >dasNov1.scaffold_256527(+):987-1401|sequence_index=0|block_index=8|species=dasNov1|dasNov1_8_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
122 CTAAATCTCGCGGAGAAGGTGGAACA-GGTTACCCAAACCCGACCGAG-GAGGCGAGTTG---GAAACGGCGACTGGGACAAGCTCCCTCA---GAGACGGAGAGAGACCCCA-GTGGAAGGGGGGAGAGGCTCTTAGGGAAACGATGGGGGGACCCGCCCGCACCCGCACAGAGGCGCTGGCAGGCACAGCGGCCCCGAGGAGCCC------AGGAGC-AGGGC-TGTGT-TCCCCTGCATcaggggttggcaaactttttctgcaaagggccagatagtaaatattttaggctttgcaaaccaagaagtagaaagggaggcc-attatgtacgtatttatatagcaagagagaacattt---cccacaatttttttattgacagaatttaaaacttctttattgatgaacaccaaagaaacttgaatttcatat
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
123
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
124 >hg17.chr7(+):127472681-127472715|sequence_index=0|block_index=9|species=hg17|hg17_9_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
125 aattttcccat---gagaactattcttcttttgtttt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
126 >rheMac2.chr3(+):165789492-165789526|sequence_index=0|block_index=9|species=rheMac2|rheMac2_9_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
127 aattttcacat---aagaactattcttcttttgtttt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
128 >panTro1.chr6(+):129886562-129886596|sequence_index=0|block_index=9|species=panTro1|panTro1_9_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
129 aattttcccgt---gagaactattcttcttttgtttt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
130 >canFam2.chr14(-):11089108-11089143|sequence_index=0|block_index=9|species=canFam2|canFam2_9_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
131 aatggtcatgt--ccataactattcttcttttatttt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
132 >dasNov1.scaffold_256527(+):1401-1433|sequence_index=0|block_index=9|species=dasNov1|dasNov1_9_0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
133 aattttcacatatcacgaagtatttttttttt-----
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
134