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comparison gbk2rdf/gbktordf.xml @ 4:47d1b27466ee

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EMBL testcase added
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 13:49:11 +0100
parents db04e12b8779
children
comparison
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3:db04e12b8779 4:47d1b27466ee
4 <requirement type='package' version="1.0">rdflib</requirement> 4 <requirement type='package' version="1.0">rdflib</requirement>
5 </requirements> 5 </requirements>
6 <description>Genbank to RDF conversion</description> 6 <description>Genbank to RDF conversion</description>
7 <command interpreter="python3.4">gbktordf.py '-input' '$input' -output '$output' -sourcedb "$format" -format "$format"</command> 7 <command interpreter="python3.4">gbktordf.py '-input' '$input' -output '$output' -sourcedb "$format" -format "$format"</command>
8 <inputs> 8 <inputs>
9 <param name="input" type="data" format="gbk,gb,genbank" label="Genbank file"/> 9 <param name="input" type="data" format="gbk,gb,genbank,embl" label="Genbank file"/>
10 <param name="format" type="select" label="EMBL/GBK"> 10 <param name="format" type="select" label="EMBL/GBK">
11 <option value="genbank" selected="true"> Genbank</option> 11 <option value="genbank" selected="true"> Genbank</option>
12 <option value="embl"> EMBL </option> 12 <option value="embl"> EMBL </option>
13 </param> 13 </param>
14 </inputs> 14 </inputs>
22 <param name="input" value="test-data/NC_010067.gbk"/> 22 <param name="input" value="test-data/NC_010067.gbk"/>
23 <output name="$output" file="NC_010067.rdf"/> 23 <output name="$output" file="NC_010067.rdf"/>
24 <output name="$format" value="genbank"/> 24 <output name="$format" value="genbank"/>
25 <output name="$sourcedb" value="genbank"/> 25 <output name="$sourcedb" value="genbank"/>
26 </test> 26 </test>
27 <test>
28 <param name="input" value="test-data/CP009049.embl"/>
29 <output name="$output" file="CP009049.rdf"/>
30 <output name="$format" value="embl"/>
31 <output name="$sourcedb" value="embl"/>
32 </test>
27 </tests> 33 </tests>
28 34
29 <help> 35 <help>
30 Genbank or EMBL to RDF conversion 36 Genbank or EMBL to RDF conversion
31 </help> 37 </help>