Mercurial > repos > jjkoehorst > sapp

diff gbk2rdf/gbktordf.xml @ 4:47d1b27466ee

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EMBL testcase added
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 13:49:11 +0100
parents db04e12b8779
children
line wrap: on
line diff
--- a/gbk2rdf/gbktordf.xml	Sat Feb 21 07:28:39 2015 -0500
+++ b/gbk2rdf/gbktordf.xml	Sat Feb 21 13:49:11 2015 +0100
@@ -6,7 +6,7 @@
 	<description>Genbank to RDF conversion</description>
 	<command interpreter="python3.4">gbktordf.py '-input' '$input' -output '$output' -sourcedb "$format" -format "$format"</command>
 	<inputs>
-		<param name="input" type="data" format="gbk,gb,genbank" label="Genbank file"/>
+		<param name="input" type="data" format="gbk,gb,genbank,embl" label="Genbank file"/>
 		<param name="format" type="select" label="EMBL/GBK">
 			<option value="genbank" selected="true"> Genbank</option>
 			<option value="embl"> EMBL </option>
@@ -24,6 +24,12 @@
       		<output name="$format" value="genbank"/>
       		<output name="$sourcedb" value="genbank"/>
     	</test>
+    	<test>
+      		<param name="input" value="test-data/CP009049.embl"/>
+      		<output name="$output" file="CP009049.rdf"/>
+      		<output name="$format" value="embl"/>
+      		<output name="$sourcedb" value="embl"/>
+    	</test>
   </tests>
   
 	<help>