Mercurial > repos > jjkoehorst > sapp
comparison sappDocker/pathwayAnalysis.xml @ 31:957156367442 draft
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| author | jjkoehorst |
|---|---|
| date | Wed, 29 Jun 2016 01:36:58 -0400 |
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| 30:0a947cb25a3d | 31:957156367442 |
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| 1 <tool id="DPathway" name="Pathway analysis" version="0.1"> | |
| 2 <description/> | |
| 3 <command interpreter="docker">java -jar /pathwayanalysis/target/pathwayAnalysis-0.0.1-SNAPSHOT-jar-with-dependencies.jar -input $input -output $output -format TURTLE</command> | |
| 4 <inputs> | |
| 5 <param format="ttl" label="Annotated RDF file" name="input" type="data"/> | |
| 6 </inputs> | |
| 7 <outputs> | |
| 8 <data format="tsv" label="PathwayAnalysis: ${input.name}" name="output"/> | |
| 9 </outputs> | |
| 10 <help>Pathway overview information for MetaCyc and KEGG | |
| 11 </help> | |
| 12 </tool> |