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comparison rnaseq/cutadapt/test-data/extract_genomic_dna_out5.fasta @ 11:a712b378e090

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cutadapt added
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 16:33:42 +0100
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comparison
equal deleted inserted replaced
10:3378d12591ea 11:a712b378e090
1 >mm9_chr10_62044837_62045189_+
2 AATTACAAGATCGACACACCAAGATAGGCAGATCCATGGTTGGTTTTACT
3 TTGTAAATCTAAAAGTATGTTGGAAAACGATGCAATGAATTCTTATCCTT
4 TTTCAAAATGAAGAATTTGTGATGGTTAGTGGACAGTTCAGAAGCCTCTC
5 TGCAAGAAAGGGGGCGCTGAGAAGTGGTAAAAAAAGGAAGGAAGCACTCG
6 GGCTTTGTCAGCAGGGTGGACCCTGGGGTCCACAGTGGGAACAGTCCCTT
7 CTGGCCTCTACTCACTGACCAAACGCTTTACTAAAACTCCGCTTCTGGCC
8 TCTGTTGCCACCTCCTGGTCGCTGTCCTCGGAAGTTTCTACTTCCTCCTC
9 GCT
10 >mm9_chr10_75372919_75373002_+
11 GCGTCTCGCAGCTTCTGCCCGTCGATCTCCATGTCGAGCCGGATGGGCAC
12 CAGCACCTCAGGCTGTGACGCATTCTCATGGATC
13 >mm9_chr10_80362428_80363292_-
14 ATGACGGACAAGTGTTTCCGGAAGTGCATCGGGAAGCCCGGGGGCTCCTT
15 GGATAACTCGGAGCAGGTGAGACATCTCGGGAACCCGGGGTGGTGAGGGG
16 CGCGGGGTCAGGAGCGTCTAGGAGGTTGAGAGATGTGCGCGTGCGCGGCC
17 TCTAGCCTTAGCTACTGAGGAAGTTGTGCGCGTGCGCGGGGTGAGGACCC
18 GGCTTCTGTGCCTAGATCGGTGCAGCCTTCATGGGTGATCCTCGGGTCGT
19 GTGACCGTCAGTCAGGGATCCCCCTCCACGCTTTGCAGAAATGCATCGCC
20 ATGTGCATGGACCGCTACATGGACGCCTGGAATACCGTGTCCCGCGCCTA
21 CAACTCTCGACTGCAGCGGGAACGAGCCAACATGTGACCGGGACCTGTGC
22 CTCGGGACACCGTGCTTATGGTCTGAACTGTTTTCCCTGCCAGTTAGGGT
23 GTCTCCTCCTAGCCGCCCTGAAGTCTGGCAGCATGGAGGGCTTGGGGATC
24 GAGGCCTCTCCCCTGGGTTGCTGCGTCCAGCTCAATCTCAGAAGAGAGTG
25 AGGACCCGACAGAGCACAGGGATCTGGCTGGCCCCACTGACCTGTGACCT
26 CAGGAGAGCAGGCCAATAAATCGCTGCTGGGGCAGTAAAGCAGGCGTGTC
27 ACCTCACTGCTTCAGGTCCCTTCCCCTGAGTAGGCCCAGACCTCCCAGGG
28 TATCTTTCCCCTTGGGGTCAGTGGGCTGCTGGCTCTCAGGGAATTCGGAG
29 CATGATCTCAGGTGTTTGGTCATCCCGGGGAGACCAGCCGAGGTTAAGAA
30 GCAAGGCTTCATGTagccttcacctatcatgcatgaggcccagggtgctg
31 accttaactctgaat
32 >mm9_chr11_7904565_7904642_+
33 CATCTTCTATTTGAGCCTCCATCCAGGCACCTCTGAAACAAAGGTGCACT
34 CACTGCATGTCCACTTGTCACAGGAGCC
35 >mm9_chr11_78140156_78140259_+
36 CTGCTTGCTAATTTTCTCTCTTGGGATCAGGGGGACGTGAACTCCAGCCC
37 TGACTCGTGCTCCTTATGCTCTGAGTACATAGCAAATAAATGAGAGCAAA
38 ACAC
39 >mm9_chr11_105616462_105616737_+
40 TAGGTGTAATAGTGGAAAACAATAGTTTTTAAACTTCAGAGTCCAGGGCT
41 GTAACTCAGTAGTAACAGTGTTCTCTAAGTATGTTATTCTTCCTCTACAT
42 GCTGAAATTTTTCATATTTGGAGCATTCACTGTTCCATGTATCAGTAAAT
43 TATATTGTGAGCTGTCATCATATCTAAGCACCATATTGAATATTTTTCAT
44 GATTAAAATTTGTTGAAACAACAATTCTATGACCGAAAAAAGCAAGGCTT
45 TGTAAATAACATGTTTGTTACTAGTA
46 >mm9_chr12_30701762_30702509_+
47 TGTGGAGTGTACTTATATGATCCCTATGCTGATAGGATTACCTTCCTAGA
48 CATAGCTAGACGCAAAGCCACATGTGTAAGGCTGCTGAGCAAAGACAGCA
49 TCCCAGCATGGGTGTGTTCACGGTGGATTCACCACGTTGCATATGTAAAG
50 TGGTCCCCTTGGCTTACCCTTCACTTTGCTCATGAGATTCAGAAGCTGGT
51 GGTCCAGCAGGGGTGAGCATTTGTGAAATAGTAAGCTGAACTTAGTGGTG
52 AGATTTCAGAACAGACTTCTGTGAAGTAAGAGATGTAACCATGCATCTAA
53 AATCAGATGGCCGTGTAACTGCTCGGGCATAGAAATGGTGGGAGAACCTG
54 TCCTGGGTACCTGGCATTTCACATGAGCCCAGGGATATGTCTTGTGCCAA
55 GGCACACAAGTGTCCATGGACTTGGACAGGTGCCAAGGGTTTTTGTCTCT
56 GTTCCTATGTGGGAGGCTGGCTGTGATTTACATTAATTTCTGTATTTCAA
57 ACGAAGATGTCTGCAGATCTCCATTTTGATGTTACAGCCTCATTGCCCAG
58 GCAGTGGGCAGTGCCCAGACACCCTTTCTGACTAGCCACTGCATTGGGCT
59 TCTGTGATTCAAAGTAGTGTATATATTTATTTACTTCTCTGACTGTGGCC
60 AACAGCCAAATGCCATTTTATGTTCCTTGTATTCAGTCCATTACCAAAGA
61 GGTGTTTGCACTTTGTAATGATACCTTTCAGTTCAAATAAAAGGACCA
62 >mm9_chr13_49159496_49159569_+
63 ttttcttttggattacttgatttttttttatttgatcttatttatgatga
64 ttttgagtacatttttgaacagtt
65 >mm9_chr13_100200304_100200330_+
66 TCTCATATGAATAGCCACCCTCTTCTG
67 >mm9_chr14_31949103_31949152_+
68 GGATGCTATCCGCGATGTGCATGTAAAGGGCCTCATGTACCAGTGGATCG
69 >mm9_chr14_67604227_67604668_+
70 TTCACCGTGAGAGTTTTCTCCATTTCACTCTTCACTGTGCTGTTCTCTGT
71 GCCGCTTTCCTCTTGACTTATAAACATCTGAGCCAGTTTTCAATAAACTT
72 AAAACGAAGCCTGCTTCTCATCCCAAATTGTAAACAGGAATAAAGCTTTT
73 TAAACCTTATCTTAAATTTTAACTTTGTTGAATTCTGCTTTGTGATAGGA
74 CAATCTGTTTCACCCAACAAGAATCTGTGTAGGAGGATGAACATCCCGCA
75 TGTTGGAGCTGCAAATCAGCACTGTACAAGCTCACTGATGGACAGCTGTT
76 CTGTGATGTATTCCATGATTTTACTAATACTTTCAAAAATGGCAAAACTA
77 ACTTCAGTTTTAATGTTGAAAGAAAATCATAAATGTTCCCATAGTTCAAT
78 GGCACTGTCGATGAAACTGCTACTGAATTTAGAGAGAAAACG
79 >mm9_chr14_75165582_75165744_+
80 ggccctgggatgataTAACAGAAGAGTCTAAAGGAGGCTTCTGAGATGTG
81 CAGTAGGAAAGCCTGGCACATAATAGGTTATTATCTAAATCCCTTCACTA
82 CTCTTCAAAGACAGCAGGATGCCTCTGCTCCCATGTTTTATCTCTACTTA
83 TGTGGAATTTATG
84 >mm9_chr16_57154027_57154067_+
85 GTTGAGGTTTATTTAAGTAAAATGATTTTTTAAAAAAGCAA
86 >mm9_chr16_74862302_74862560_+
87 GCATTGGCAGCAGATATTGGTACCCAGTGGCACTGCAGAGTACTTACAAT
88 CAGGACTCGCTACTGTGCTTCATTCTGCTTTTCTCTCTGCTTCTATTACA
89 GTTAAAGTGTTGCTAATTATAGAAACTCTCTGTTTATTGAACCTCGGTGT
90 TAAGAAAAACTTGTAATCTTCAGATATGATCCGAAAGATTCCCAAACAAA
91 TGTAACAAGGTCCACTTTTGTAGCCCTTTCTACCAGAAcactggttatca
92 acctgtggg
93 >mm9_chr16_98168779_98168914_+
94 CCTATTTATTTCACTAAACATCTGCCTGCTAGCTGAGATAAACATTCTCT
95 AAAAAACTGTTTACTGCAAAAAGTGATTACTGTTTTTTATTAGTTTCTTA
96 GCATTTGAAATAGTTACATGAATGGAAGGATAGAGT
97 >mm9_chr17_8483212_8483268_+
98 AGACTTGTCAACAGCTCACCCAATGATGGAACTGAGGCTGCCCCTCAAGT
99 GGCCAGA
100 >mm9_chr17_30355791_30355913_+
101 atctcatacccataagctcagaactcggggtggtaacataggaggactgc
102 catgagtgtgactaacctgggctataggaggaggatctaccttaagcaaa
103 tgaCCAACAAAACTAACAAGCTC
104 >mm9_chr18_39571718_39571880_+
105 TATAACATTCCATAAATGTACAATAATCTATTTTTGAGAAGCTCATTTTG
106 AAACTTAACACTGTCATTGATAATCTTCAAGTGGTATTTCTTAGGCACCA
107 TAAATTTCACATCCAGCTGGGTTACAATTATTTTAAAGTACTTTGAGACC
108 AATTTAAACCATT
109 >mm9_chr19_17633088_17633203_+
110 TGGGAAATGAACTGCATGGCAATGAACCCCAGGGAATTTGGTGGTTAATT
111 GTCTAAGGATAAGGACATCAGTTTTGTCTTTTGCATCACTGTGACCTTTG
112 CCTCTAATTGTATAGA
113 >mm9_chr19_41997624_41997859_+
114 gctacacaacgactcacatagagggaagcaggcacacatcagataaaaca
115 cAAAAGGATGGGTTGGTGATGGGCATAGTTAATGAGGGCCACTAGGTAAA
116 TACACCTGATCCAAAAGTCACGCTACTACTTAGATTCTTCTCTCTGCTAA
117 AGACAACAGAAgacatgttagccatgcttgtaatccctgcattggggaga
118 tggagtcagaaatatcactgcaagttcacccaatag
119 >mm9_chr19_56516515_56516684_+
120 TGTATTCATTCACTATTCACTGATTTGTCAGATCATCCATCCACACAGGT
121 GCTGAAGAGTAACCCATTTCACTTTGTATACAAGATAATGTTTTTGTACT
122 TCAAATACATCTGGAATTCTTTCAAATATTCCAAGATTTTTTTTTTTTCT
123 GAATAATCTTTGGTTACCTC
124 >mm9_chr2_4543774_4543977_+
125 gagccatttctccagccccTTTATGTGGAATATTAACAAGAGAAGACAAC
126 ATAAAATGACTTACCATGCTGTGTGGCCTAACAGTGGATGAAGAATGAGT
127 GATTTGGGCATTTCTGATAGTATTTATAAAGAAGACTTTTATGACCAAAC
128 CACATGTCACAGTAGGGATTTGCTGCACATCTTATGAGAGTTTCTTCTTT
129 GTCA
130 >mm9_chr2_30200331_30200938_+
131 CGCACACAAAGGATTTATTTGCCAGAGAGCAAGCAGACAGGCAGAGGTCA
132 GAATGTTAGTTAGAAACTGAAGGAATGACTGCTGTAGCCACTGTGCCCAG
133 CCAGAGCCATGAGGGAAGTGGGAGGCAGCACTTGGTGCTGCTGCTCTGGC
134 TGACCCTTCTGGTTTCCTGCCACACTCCTAGCCCTGCCTGTGTGCTGCTG
135 TCCCCCTCAACCTTCCACAGCCAGAAGGCAGATGTTCTTTCATGCCAAGA
136 GCATCCATCCCCAGCATATCCTGGGCCCATGGTGGTGTCAAATGTAGTGA
137 CCCTTCTGCCTTAAGGGAGCTGGGAAGCCTGGGGTGTGCAGGGTTGCAGG
138 TCAGAAGCAGGACTAGCAGAGGGGCCTGGGGCCATTCTGTCTTGTGGGCT
139 CTTTAATAGCTGAATGACGGGCACAGCCAGAAAAGGGTTAGGTCCCTTAT
140 CCTAAGCAGCTCTGTGGCCAGCAGACGACTCTAAGTGGCAGAGCCTGGGA
141 AGGGGCTGCTTAGCTGAGAAGTTCCAGGTAGGTGACAGGAACCTTGCCCT
142 TCTTGTTGCCTCTCTCACCAATGAGCCAGTCGGGATCCATGCCTGGCAGG
143 CTGTAGAC
144 >mm9_chr2_106644220_106644341_+
145 attcttaaggtaaatacctaggagtgatgtaacccagtcatagggaagaa
146 ctacttttaatttgttgagcaacccccaacctgattttgacacaggtttg
147 agtagtttacacttctactaac
148 >mm9_chr2_125388931_125389219_+
149 AGAGCACACAGCACATCACTTAGGCCTCCAACATTAAGGCAGCGCAAGTG
150 CCTCAAGTAACTGAGAATACTTTACTCAGATACAAGGGTATCAAAAACAT
151 GAGAACTGGCAGGAAGACCTCACAATGGTTTGTTAGCATCAAGTATTACC
152 ATCCAGTTTCCTGTTTAAATAGTAATTAATGACTATTCTGAAATAAGGCA
153 AATAATTACTCAAGCGGGCTGTCAAAGCCACTATCCTGTTGGCTGGGCAT
154 CGGAGCAGTTAACTTTATCAAAGGCTTCTGACACAATGA
155 >mm9_chr3_130936639_130936898_+
156 CGAGGCTGCAGGCTGCAAATGTTCCCAGGCAGGCAAGACCTCACGTCCTA
157 CTGGCTGCTGCCCTTGGGTGCATCTGTAGGCCCCGTGGCTCCTGCCCCTG
158 GGGTTCAACACCGATAAACATAGAATACTCATTTTCAGAAGACCTGAGGG
159 AATGAGTCTAAGCAACGCTTTTTACAAAAAGTGGCAAGGTTCAGGAAAAA
160 AAAAAAAAAAGATGTTGCTCCAAGGCACCAAGGGTGTAATTTTTTTTCAG
161 AAAAAGTCAG
162 >mm9_chr3_136592671_136592771_+
163 TGTCAGCCCATCACATTTTAGTGACAACAGTCATAGCCTTTATTTTCAGA
164 TGACTTTCCTCTAAAACCACTGTCTATGAGTTGCCCCCCAAAACTCAAAA
165 A
166 >mm9_chr3_152861374_152861508_+
167 ATCAAAAGCGACATGCAAGCATCTTGCTCTCACCACAGATCACTGAGACA
168 TTAAGAGTGACGTCTCTTGAACTGTTGGCACGCCTAAGTTATTTCAGCAT
169 TTCTTGCTCAGCAGTTGTTCTCTTGGCTTCCTCTG
170 >mm9_chr4_13715310_13715630_+
171 AACACATGGCCACATCATGTGATATTTTCAAAACACTTACACATAGCTTT
172 GAGAAGGTCCCTGCAGGAATGATCCATCCTCTCACAGTTGGCCCATTTTT
173 TAACAGCATATCTGCATTTTCCATTTAGGAGAGCTATATATTATTAGCTT
174 ACATTTTTGGGTAGTAAAACAGTGCATTGCTGATTGTAAAACATGGACTT
175 TATTATCTGCTGAAAATTGATTTGGCATTTATAGCCACTGTGTATTAGAC
176 TGTTTTTCTGTTTTTAACATCAATGCTTAAAAGCGATGATTTGTGTTTaa
177 aaaaattaaaaaaataaaata
178 >mm9_chr4_147515029_147515097_+
179 GCTGACGTGCTCTCCGAGTTCCTGGAGGTGGCCGTGCACCTGATTCTCTA
180 TGTGCGCGAGGTCTACCCG
181 >mm9_chr5_3949522_3949685_+
182 AGTCCCAACCACCCCCTTGTTTAATGTATAACTTTCTGAAATGGGAGCGT
183 TAGAATGGATTAAAATGGTTGGTAGGTGGTTGGATCACCAACCAAGACCA
184 GAAATAGAGGGGTAGGCTGCTCAGGAGAGTATTGGGAGGGTAGCTATTAT
185 TTGCATTTTGTGCT
186 >mm9_chr5_68089694_68089831_+
187 CAATGATAGAGAAGACTAAAATAAAAGCAGGCATGCTGGCACAAGCGACA
188 GAAGGAAAAAGCCTCACCCGGCCCTGTTTGAGGCCACTCCTGGTGGCTCC
189 TTTTCCAAGGACCATGCGGTCAAGCCTCTGAGTTGTTC
190 >mm9_chr5_122819526_122819619_+
191 CTTTAGAAAAGATGCATCTGTCATTGATTTAGGGATATGAATTGTTTGGA
192 TTTGAGTAGTTTTCCATAACTCCTGCAGTTTGGCAATGTGTGCG
193 >mm9_chr5_145619548_145619710_+
194 CGGCGTTCTGAAAACTGTGCTCCGGGATGAGATCATTGCTTGGCACAAAA
195 AGACACAGGAGGACACTTCCTCTCCACTGTCGGCCGCAGGGCAGCCTGAG
196 AACATGGACAGCCAGCAGCTGGTTTCCTTAGTTCAGAAAGCCGTCACTGC
197 CATCATGACCCGC
198 >mm9_chr6_83928984_83929105_+
199 ACAGGAACCATTATTTACATTTAATTTGGATGAATTTGTTACTGTGGATG
200 AAGTCATAGAAGAAGTAAATCCTTCTCAAGCCAAGCAGAATCCATTAAAA
201 GGAAAAAGAAAGGAAGCCCTCA
202 >mm9_chr6_118857949_118858148_+
203 CCAGGCTTGCTAGTTGGTGCAGTTAGCTACATCTCAGGACAGAGACAAGG
204 TACTCTGAGCTCCCCTTGAACTGCCACACAAGCTGTCTCCTGGATGCCAA
205 GCAGAGAAACCTGGAGACAACAATCATCATACTCAAAACCAGGATCTCTT
206 TCTTAAGACTTTTGTATTTTGTCCCAGCCCTAACCCTGAGTTCTGCTGAA
207 >mm9_chr7_85554210_85554343_+
208 GTGAAACATCATGCTTCTGCATCAAGTTATTAGTGGGAAACCTGTAAAAG
209 TTGACATTGAATGCTGATAACAAATTACTTTCATCCTGTCTCATAATGAA
210 TCCTACATCAAGACAAGGCAAGTGAGAAAGAGGG
211 >mm9_chr7_104055491_104055589_+
212 ACATTTCTCCTCTCTTGGGGGAGCGCATCTCCTTGGGTGTGTCCACATCC
213 GCCCCTAGGTACCCAGTGTGATGTGAGACACGAGTGTCTGTGCTAACTT
214 >mm9_chr8_9970398_9970545_+
215 AGTCTTCACCAAAATTAAGTCTCAGCTAACTTAAAAGTTGCAAGGATTTT
216 TTTCAATAAAATTAATATCTTAAGTGTTTGGTGTTTAGATGATTCTCTCT
217 CAACTTCCCCCACATTATCAAAAAACATTTGATGAACCTTAAAAACTC
218 >mm9_chr9_20449846_20449932_+
219 CCAGCACCGATGACACCATCGGCGACTTGAAGAAACTGATAGCTGCTCAA
220 ACTGGCACCCGCTGGAACAAGATCGTTCTTAAAAAGT
221 >mm9_chr9_107445870_107445930_+
222 CAAGCAGAAGCTGGTGCCCATCATGACCATCCTGCTGGAAGAGCTGAATG
223 CCTCCGGCCGC
224 >mm9_chr9_120860476_120860606_+
225 CTGCCATTGTACGCACCATGCAGAATACAAATGATGTAGAGACAGCTCGT
226 TGTACTGCTGGGACTCTGCACAACCTTTCTCACCACCGCGAGGGCTTGCT
227 GGCCATCTTTAAGTCTGGTGGCATCCCAGCG
228 >mm9_chrX_10274057_10274087_+
229 ACTTCGCTGTCATCATTTGTACAAACTCTTT
230 >mm9_chrX_39881431_39881678_+
231 AGCTAAAAAGAGTCCTTTTCTGACAGAAAGGCTGGACTTCTCCTTTTCAC
232 CGTTTCTCTTACTGATGCTTTTGCCAGAAGAACAGTAAAGATTTAGACAC
233 TGTCATGATTCATACACGTAAAATATTTTTCAAGGACACAATCTGATATA
234 CTAACATTTATTTAAGAGGTTAAAGTCCACCACTAAATCTAAGGAAAGAT
235 TTTTAACTGCCAAACACATTTCCTTTGACAAATAATGTAAGATGACAA
236 >mm9_chrX_148249672_148249713_+
237 AATGCTAGTATGAACAGTGGGAGGAATGAGCAAAATGTTACA
238 >mm9_chrX_148481505_148482455_+
239 CGCCACAACCTGCTACAGGCCTGTAAGATGCAGGACATCAAACTGCCACT
240 GTCAAAGGGCACCATGGATGATATTAGTCAGGAAGAAGTGAGTATTATGG
241 TGGGTGGTAGGAGTCATCTATGAATATTTAACCAGTAATGGGAGATTACA
242 GATGGCCAGGAAGGGCAGGCAACAGATAGGACCACATAGAGTTGTGAGGG
243 GCATAAAGATGGATGCAGAAGAAATGTGGCAAGGTGGAAGTAGTGAAGTC
244 AGGCTTTGGTATGAGAGAGACATTGATTTGAGAGGAGAGCTGCAAGCCAG
245 TGAGTACTCAGAAAGACCAAGAATGGGTCATTAATCTTAAGGATTTGAGC
246 TCTTAGCTGCAGCAGATACTGGGCATGGGTAGGAGTGAGAATTGAGGAGC
247 AGAGGAAGATGGGAAACTGGAGAACCTAAGGAGACTGATAGCTTAGCTGC
248 AGTAAGGGAGGTTGGCCAGAAGAGGGTTGGGTAGGGGACTCAGCAAGGCA
249 GAACTAAGGAAGCTTAGGTGGAGGGGAAGGAACAACATCTGAGCAACTAA
250 AGCACTCTATCAACTGGAAGTGCAAGATGGTAGTGAGGGGTGGACAGGTG
251 TAACTGAGTAACTCTTTGTAGGTAGCCTTTCAGTTTAATTCAGTAAAATA
252 TTTTGAACACTAGTATTCCAGATACTGGTAGGCCATGACTTAACCATTCC
253 TAATGTTAATCTCAGCTGTGCTAGCTGAGCTTGTGTTCACATTAGACATG
254 AAGAAACTTAGTAAAAGGTAGAGCCCAGTTTTCGGTTTGGACCTTCCTGT
255 TGGCCTCTGCTTCCGTGCCATCTAGCAAAGGAGTTCCTAATCTCTAGAGG
256 GATACAAATGACTAGTCTGCTCCATCTGCCTCTTCCAACATTGCAGGGTA
257 GCTCCCAGGGAGAAGAGTCAGTGAGTGGTTCCCAGAGAACATCCAGTATC
258 T