Mercurial > repos > jjkoehorst > sapp
view rnaseq/cutadapt/test-data/extract_genomic_dna_out5.fasta @ 11:a712b378e090
cutadapt added
author | jjkoehorst <jasperkoehorst@gmail.com> |
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date | Sat, 21 Feb 2015 16:33:42 +0100 |
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>mm9_chr10_62044837_62045189_+ AATTACAAGATCGACACACCAAGATAGGCAGATCCATGGTTGGTTTTACT TTGTAAATCTAAAAGTATGTTGGAAAACGATGCAATGAATTCTTATCCTT TTTCAAAATGAAGAATTTGTGATGGTTAGTGGACAGTTCAGAAGCCTCTC TGCAAGAAAGGGGGCGCTGAGAAGTGGTAAAAAAAGGAAGGAAGCACTCG GGCTTTGTCAGCAGGGTGGACCCTGGGGTCCACAGTGGGAACAGTCCCTT CTGGCCTCTACTCACTGACCAAACGCTTTACTAAAACTCCGCTTCTGGCC TCTGTTGCCACCTCCTGGTCGCTGTCCTCGGAAGTTTCTACTTCCTCCTC GCT >mm9_chr10_75372919_75373002_+ GCGTCTCGCAGCTTCTGCCCGTCGATCTCCATGTCGAGCCGGATGGGCAC CAGCACCTCAGGCTGTGACGCATTCTCATGGATC >mm9_chr10_80362428_80363292_- ATGACGGACAAGTGTTTCCGGAAGTGCATCGGGAAGCCCGGGGGCTCCTT GGATAACTCGGAGCAGGTGAGACATCTCGGGAACCCGGGGTGGTGAGGGG CGCGGGGTCAGGAGCGTCTAGGAGGTTGAGAGATGTGCGCGTGCGCGGCC TCTAGCCTTAGCTACTGAGGAAGTTGTGCGCGTGCGCGGGGTGAGGACCC GGCTTCTGTGCCTAGATCGGTGCAGCCTTCATGGGTGATCCTCGGGTCGT GTGACCGTCAGTCAGGGATCCCCCTCCACGCTTTGCAGAAATGCATCGCC ATGTGCATGGACCGCTACATGGACGCCTGGAATACCGTGTCCCGCGCCTA CAACTCTCGACTGCAGCGGGAACGAGCCAACATGTGACCGGGACCTGTGC CTCGGGACACCGTGCTTATGGTCTGAACTGTTTTCCCTGCCAGTTAGGGT GTCTCCTCCTAGCCGCCCTGAAGTCTGGCAGCATGGAGGGCTTGGGGATC GAGGCCTCTCCCCTGGGTTGCTGCGTCCAGCTCAATCTCAGAAGAGAGTG AGGACCCGACAGAGCACAGGGATCTGGCTGGCCCCACTGACCTGTGACCT CAGGAGAGCAGGCCAATAAATCGCTGCTGGGGCAGTAAAGCAGGCGTGTC ACCTCACTGCTTCAGGTCCCTTCCCCTGAGTAGGCCCAGACCTCCCAGGG TATCTTTCCCCTTGGGGTCAGTGGGCTGCTGGCTCTCAGGGAATTCGGAG CATGATCTCAGGTGTTTGGTCATCCCGGGGAGACCAGCCGAGGTTAAGAA GCAAGGCTTCATGTagccttcacctatcatgcatgaggcccagggtgctg accttaactctgaat >mm9_chr11_7904565_7904642_+ CATCTTCTATTTGAGCCTCCATCCAGGCACCTCTGAAACAAAGGTGCACT CACTGCATGTCCACTTGTCACAGGAGCC >mm9_chr11_78140156_78140259_+ CTGCTTGCTAATTTTCTCTCTTGGGATCAGGGGGACGTGAACTCCAGCCC TGACTCGTGCTCCTTATGCTCTGAGTACATAGCAAATAAATGAGAGCAAA ACAC >mm9_chr11_105616462_105616737_+ TAGGTGTAATAGTGGAAAACAATAGTTTTTAAACTTCAGAGTCCAGGGCT GTAACTCAGTAGTAACAGTGTTCTCTAAGTATGTTATTCTTCCTCTACAT GCTGAAATTTTTCATATTTGGAGCATTCACTGTTCCATGTATCAGTAAAT TATATTGTGAGCTGTCATCATATCTAAGCACCATATTGAATATTTTTCAT GATTAAAATTTGTTGAAACAACAATTCTATGACCGAAAAAAGCAAGGCTT TGTAAATAACATGTTTGTTACTAGTA >mm9_chr12_30701762_30702509_+ TGTGGAGTGTACTTATATGATCCCTATGCTGATAGGATTACCTTCCTAGA CATAGCTAGACGCAAAGCCACATGTGTAAGGCTGCTGAGCAAAGACAGCA TCCCAGCATGGGTGTGTTCACGGTGGATTCACCACGTTGCATATGTAAAG TGGTCCCCTTGGCTTACCCTTCACTTTGCTCATGAGATTCAGAAGCTGGT GGTCCAGCAGGGGTGAGCATTTGTGAAATAGTAAGCTGAACTTAGTGGTG AGATTTCAGAACAGACTTCTGTGAAGTAAGAGATGTAACCATGCATCTAA AATCAGATGGCCGTGTAACTGCTCGGGCATAGAAATGGTGGGAGAACCTG TCCTGGGTACCTGGCATTTCACATGAGCCCAGGGATATGTCTTGTGCCAA GGCACACAAGTGTCCATGGACTTGGACAGGTGCCAAGGGTTTTTGTCTCT GTTCCTATGTGGGAGGCTGGCTGTGATTTACATTAATTTCTGTATTTCAA ACGAAGATGTCTGCAGATCTCCATTTTGATGTTACAGCCTCATTGCCCAG GCAGTGGGCAGTGCCCAGACACCCTTTCTGACTAGCCACTGCATTGGGCT TCTGTGATTCAAAGTAGTGTATATATTTATTTACTTCTCTGACTGTGGCC AACAGCCAAATGCCATTTTATGTTCCTTGTATTCAGTCCATTACCAAAGA GGTGTTTGCACTTTGTAATGATACCTTTCAGTTCAAATAAAAGGACCA >mm9_chr13_49159496_49159569_+ ttttcttttggattacttgatttttttttatttgatcttatttatgatga ttttgagtacatttttgaacagtt >mm9_chr13_100200304_100200330_+ TCTCATATGAATAGCCACCCTCTTCTG >mm9_chr14_31949103_31949152_+ GGATGCTATCCGCGATGTGCATGTAAAGGGCCTCATGTACCAGTGGATCG >mm9_chr14_67604227_67604668_+ TTCACCGTGAGAGTTTTCTCCATTTCACTCTTCACTGTGCTGTTCTCTGT GCCGCTTTCCTCTTGACTTATAAACATCTGAGCCAGTTTTCAATAAACTT AAAACGAAGCCTGCTTCTCATCCCAAATTGTAAACAGGAATAAAGCTTTT TAAACCTTATCTTAAATTTTAACTTTGTTGAATTCTGCTTTGTGATAGGA CAATCTGTTTCACCCAACAAGAATCTGTGTAGGAGGATGAACATCCCGCA TGTTGGAGCTGCAAATCAGCACTGTACAAGCTCACTGATGGACAGCTGTT CTGTGATGTATTCCATGATTTTACTAATACTTTCAAAAATGGCAAAACTA ACTTCAGTTTTAATGTTGAAAGAAAATCATAAATGTTCCCATAGTTCAAT GGCACTGTCGATGAAACTGCTACTGAATTTAGAGAGAAAACG >mm9_chr14_75165582_75165744_+ ggccctgggatgataTAACAGAAGAGTCTAAAGGAGGCTTCTGAGATGTG CAGTAGGAAAGCCTGGCACATAATAGGTTATTATCTAAATCCCTTCACTA CTCTTCAAAGACAGCAGGATGCCTCTGCTCCCATGTTTTATCTCTACTTA TGTGGAATTTATG >mm9_chr16_57154027_57154067_+ GTTGAGGTTTATTTAAGTAAAATGATTTTTTAAAAAAGCAA >mm9_chr16_74862302_74862560_+ GCATTGGCAGCAGATATTGGTACCCAGTGGCACTGCAGAGTACTTACAAT CAGGACTCGCTACTGTGCTTCATTCTGCTTTTCTCTCTGCTTCTATTACA GTTAAAGTGTTGCTAATTATAGAAACTCTCTGTTTATTGAACCTCGGTGT TAAGAAAAACTTGTAATCTTCAGATATGATCCGAAAGATTCCCAAACAAA TGTAACAAGGTCCACTTTTGTAGCCCTTTCTACCAGAAcactggttatca acctgtggg >mm9_chr16_98168779_98168914_+ CCTATTTATTTCACTAAACATCTGCCTGCTAGCTGAGATAAACATTCTCT AAAAAACTGTTTACTGCAAAAAGTGATTACTGTTTTTTATTAGTTTCTTA GCATTTGAAATAGTTACATGAATGGAAGGATAGAGT >mm9_chr17_8483212_8483268_+ AGACTTGTCAACAGCTCACCCAATGATGGAACTGAGGCTGCCCCTCAAGT GGCCAGA >mm9_chr17_30355791_30355913_+ atctcatacccataagctcagaactcggggtggtaacataggaggactgc catgagtgtgactaacctgggctataggaggaggatctaccttaagcaaa tgaCCAACAAAACTAACAAGCTC >mm9_chr18_39571718_39571880_+ TATAACATTCCATAAATGTACAATAATCTATTTTTGAGAAGCTCATTTTG AAACTTAACACTGTCATTGATAATCTTCAAGTGGTATTTCTTAGGCACCA TAAATTTCACATCCAGCTGGGTTACAATTATTTTAAAGTACTTTGAGACC AATTTAAACCATT >mm9_chr19_17633088_17633203_+ TGGGAAATGAACTGCATGGCAATGAACCCCAGGGAATTTGGTGGTTAATT GTCTAAGGATAAGGACATCAGTTTTGTCTTTTGCATCACTGTGACCTTTG CCTCTAATTGTATAGA >mm9_chr19_41997624_41997859_+ gctacacaacgactcacatagagggaagcaggcacacatcagataaaaca cAAAAGGATGGGTTGGTGATGGGCATAGTTAATGAGGGCCACTAGGTAAA TACACCTGATCCAAAAGTCACGCTACTACTTAGATTCTTCTCTCTGCTAA AGACAACAGAAgacatgttagccatgcttgtaatccctgcattggggaga tggagtcagaaatatcactgcaagttcacccaatag >mm9_chr19_56516515_56516684_+ TGTATTCATTCACTATTCACTGATTTGTCAGATCATCCATCCACACAGGT GCTGAAGAGTAACCCATTTCACTTTGTATACAAGATAATGTTTTTGTACT TCAAATACATCTGGAATTCTTTCAAATATTCCAAGATTTTTTTTTTTTCT GAATAATCTTTGGTTACCTC >mm9_chr2_4543774_4543977_+ gagccatttctccagccccTTTATGTGGAATATTAACAAGAGAAGACAAC ATAAAATGACTTACCATGCTGTGTGGCCTAACAGTGGATGAAGAATGAGT GATTTGGGCATTTCTGATAGTATTTATAAAGAAGACTTTTATGACCAAAC CACATGTCACAGTAGGGATTTGCTGCACATCTTATGAGAGTTTCTTCTTT GTCA >mm9_chr2_30200331_30200938_+ CGCACACAAAGGATTTATTTGCCAGAGAGCAAGCAGACAGGCAGAGGTCA GAATGTTAGTTAGAAACTGAAGGAATGACTGCTGTAGCCACTGTGCCCAG CCAGAGCCATGAGGGAAGTGGGAGGCAGCACTTGGTGCTGCTGCTCTGGC TGACCCTTCTGGTTTCCTGCCACACTCCTAGCCCTGCCTGTGTGCTGCTG TCCCCCTCAACCTTCCACAGCCAGAAGGCAGATGTTCTTTCATGCCAAGA GCATCCATCCCCAGCATATCCTGGGCCCATGGTGGTGTCAAATGTAGTGA CCCTTCTGCCTTAAGGGAGCTGGGAAGCCTGGGGTGTGCAGGGTTGCAGG TCAGAAGCAGGACTAGCAGAGGGGCCTGGGGCCATTCTGTCTTGTGGGCT CTTTAATAGCTGAATGACGGGCACAGCCAGAAAAGGGTTAGGTCCCTTAT CCTAAGCAGCTCTGTGGCCAGCAGACGACTCTAAGTGGCAGAGCCTGGGA AGGGGCTGCTTAGCTGAGAAGTTCCAGGTAGGTGACAGGAACCTTGCCCT TCTTGTTGCCTCTCTCACCAATGAGCCAGTCGGGATCCATGCCTGGCAGG CTGTAGAC >mm9_chr2_106644220_106644341_+ attcttaaggtaaatacctaggagtgatgtaacccagtcatagggaagaa ctacttttaatttgttgagcaacccccaacctgattttgacacaggtttg agtagtttacacttctactaac >mm9_chr2_125388931_125389219_+ AGAGCACACAGCACATCACTTAGGCCTCCAACATTAAGGCAGCGCAAGTG CCTCAAGTAACTGAGAATACTTTACTCAGATACAAGGGTATCAAAAACAT GAGAACTGGCAGGAAGACCTCACAATGGTTTGTTAGCATCAAGTATTACC ATCCAGTTTCCTGTTTAAATAGTAATTAATGACTATTCTGAAATAAGGCA AATAATTACTCAAGCGGGCTGTCAAAGCCACTATCCTGTTGGCTGGGCAT CGGAGCAGTTAACTTTATCAAAGGCTTCTGACACAATGA >mm9_chr3_130936639_130936898_+ CGAGGCTGCAGGCTGCAAATGTTCCCAGGCAGGCAAGACCTCACGTCCTA CTGGCTGCTGCCCTTGGGTGCATCTGTAGGCCCCGTGGCTCCTGCCCCTG GGGTTCAACACCGATAAACATAGAATACTCATTTTCAGAAGACCTGAGGG AATGAGTCTAAGCAACGCTTTTTACAAAAAGTGGCAAGGTTCAGGAAAAA AAAAAAAAAAGATGTTGCTCCAAGGCACCAAGGGTGTAATTTTTTTTCAG AAAAAGTCAG >mm9_chr3_136592671_136592771_+ TGTCAGCCCATCACATTTTAGTGACAACAGTCATAGCCTTTATTTTCAGA TGACTTTCCTCTAAAACCACTGTCTATGAGTTGCCCCCCAAAACTCAAAA A >mm9_chr3_152861374_152861508_+ ATCAAAAGCGACATGCAAGCATCTTGCTCTCACCACAGATCACTGAGACA TTAAGAGTGACGTCTCTTGAACTGTTGGCACGCCTAAGTTATTTCAGCAT TTCTTGCTCAGCAGTTGTTCTCTTGGCTTCCTCTG >mm9_chr4_13715310_13715630_+ AACACATGGCCACATCATGTGATATTTTCAAAACACTTACACATAGCTTT GAGAAGGTCCCTGCAGGAATGATCCATCCTCTCACAGTTGGCCCATTTTT TAACAGCATATCTGCATTTTCCATTTAGGAGAGCTATATATTATTAGCTT ACATTTTTGGGTAGTAAAACAGTGCATTGCTGATTGTAAAACATGGACTT TATTATCTGCTGAAAATTGATTTGGCATTTATAGCCACTGTGTATTAGAC TGTTTTTCTGTTTTTAACATCAATGCTTAAAAGCGATGATTTGTGTTTaa aaaaattaaaaaaataaaata >mm9_chr4_147515029_147515097_+ GCTGACGTGCTCTCCGAGTTCCTGGAGGTGGCCGTGCACCTGATTCTCTA TGTGCGCGAGGTCTACCCG >mm9_chr5_3949522_3949685_+ AGTCCCAACCACCCCCTTGTTTAATGTATAACTTTCTGAAATGGGAGCGT TAGAATGGATTAAAATGGTTGGTAGGTGGTTGGATCACCAACCAAGACCA GAAATAGAGGGGTAGGCTGCTCAGGAGAGTATTGGGAGGGTAGCTATTAT TTGCATTTTGTGCT >mm9_chr5_68089694_68089831_+ CAATGATAGAGAAGACTAAAATAAAAGCAGGCATGCTGGCACAAGCGACA GAAGGAAAAAGCCTCACCCGGCCCTGTTTGAGGCCACTCCTGGTGGCTCC TTTTCCAAGGACCATGCGGTCAAGCCTCTGAGTTGTTC >mm9_chr5_122819526_122819619_+ CTTTAGAAAAGATGCATCTGTCATTGATTTAGGGATATGAATTGTTTGGA TTTGAGTAGTTTTCCATAACTCCTGCAGTTTGGCAATGTGTGCG >mm9_chr5_145619548_145619710_+ CGGCGTTCTGAAAACTGTGCTCCGGGATGAGATCATTGCTTGGCACAAAA AGACACAGGAGGACACTTCCTCTCCACTGTCGGCCGCAGGGCAGCCTGAG AACATGGACAGCCAGCAGCTGGTTTCCTTAGTTCAGAAAGCCGTCACTGC CATCATGACCCGC >mm9_chr6_83928984_83929105_+ ACAGGAACCATTATTTACATTTAATTTGGATGAATTTGTTACTGTGGATG AAGTCATAGAAGAAGTAAATCCTTCTCAAGCCAAGCAGAATCCATTAAAA GGAAAAAGAAAGGAAGCCCTCA >mm9_chr6_118857949_118858148_+ CCAGGCTTGCTAGTTGGTGCAGTTAGCTACATCTCAGGACAGAGACAAGG TACTCTGAGCTCCCCTTGAACTGCCACACAAGCTGTCTCCTGGATGCCAA GCAGAGAAACCTGGAGACAACAATCATCATACTCAAAACCAGGATCTCTT TCTTAAGACTTTTGTATTTTGTCCCAGCCCTAACCCTGAGTTCTGCTGAA >mm9_chr7_85554210_85554343_+ GTGAAACATCATGCTTCTGCATCAAGTTATTAGTGGGAAACCTGTAAAAG TTGACATTGAATGCTGATAACAAATTACTTTCATCCTGTCTCATAATGAA TCCTACATCAAGACAAGGCAAGTGAGAAAGAGGG >mm9_chr7_104055491_104055589_+ ACATTTCTCCTCTCTTGGGGGAGCGCATCTCCTTGGGTGTGTCCACATCC GCCCCTAGGTACCCAGTGTGATGTGAGACACGAGTGTCTGTGCTAACTT >mm9_chr8_9970398_9970545_+ AGTCTTCACCAAAATTAAGTCTCAGCTAACTTAAAAGTTGCAAGGATTTT TTTCAATAAAATTAATATCTTAAGTGTTTGGTGTTTAGATGATTCTCTCT CAACTTCCCCCACATTATCAAAAAACATTTGATGAACCTTAAAAACTC >mm9_chr9_20449846_20449932_+ CCAGCACCGATGACACCATCGGCGACTTGAAGAAACTGATAGCTGCTCAA ACTGGCACCCGCTGGAACAAGATCGTTCTTAAAAAGT >mm9_chr9_107445870_107445930_+ CAAGCAGAAGCTGGTGCCCATCATGACCATCCTGCTGGAAGAGCTGAATG CCTCCGGCCGC >mm9_chr9_120860476_120860606_+ CTGCCATTGTACGCACCATGCAGAATACAAATGATGTAGAGACAGCTCGT TGTACTGCTGGGACTCTGCACAACCTTTCTCACCACCGCGAGGGCTTGCT GGCCATCTTTAAGTCTGGTGGCATCCCAGCG >mm9_chrX_10274057_10274087_+ ACTTCGCTGTCATCATTTGTACAAACTCTTT >mm9_chrX_39881431_39881678_+ AGCTAAAAAGAGTCCTTTTCTGACAGAAAGGCTGGACTTCTCCTTTTCAC CGTTTCTCTTACTGATGCTTTTGCCAGAAGAACAGTAAAGATTTAGACAC TGTCATGATTCATACACGTAAAATATTTTTCAAGGACACAATCTGATATA CTAACATTTATTTAAGAGGTTAAAGTCCACCACTAAATCTAAGGAAAGAT TTTTAACTGCCAAACACATTTCCTTTGACAAATAATGTAAGATGACAA >mm9_chrX_148249672_148249713_+ AATGCTAGTATGAACAGTGGGAGGAATGAGCAAAATGTTACA >mm9_chrX_148481505_148482455_+ CGCCACAACCTGCTACAGGCCTGTAAGATGCAGGACATCAAACTGCCACT GTCAAAGGGCACCATGGATGATATTAGTCAGGAAGAAGTGAGTATTATGG TGGGTGGTAGGAGTCATCTATGAATATTTAACCAGTAATGGGAGATTACA GATGGCCAGGAAGGGCAGGCAACAGATAGGACCACATAGAGTTGTGAGGG GCATAAAGATGGATGCAGAAGAAATGTGGCAAGGTGGAAGTAGTGAAGTC AGGCTTTGGTATGAGAGAGACATTGATTTGAGAGGAGAGCTGCAAGCCAG TGAGTACTCAGAAAGACCAAGAATGGGTCATTAATCTTAAGGATTTGAGC TCTTAGCTGCAGCAGATACTGGGCATGGGTAGGAGTGAGAATTGAGGAGC AGAGGAAGATGGGAAACTGGAGAACCTAAGGAGACTGATAGCTTAGCTGC AGTAAGGGAGGTTGGCCAGAAGAGGGTTGGGTAGGGGACTCAGCAAGGCA GAACTAAGGAAGCTTAGGTGGAGGGGAAGGAACAACATCTGAGCAACTAA AGCACTCTATCAACTGGAAGTGCAAGATGGTAGTGAGGGGTGGACAGGTG TAACTGAGTAACTCTTTGTAGGTAGCCTTTCAGTTTAATTCAGTAAAATA TTTTGAACACTAGTATTCCAGATACTGGTAGGCCATGACTTAACCATTCC TAATGTTAATCTCAGCTGTGCTAGCTGAGCTTGTGTTCACATTAGACATG AAGAAACTTAGTAAAAGGTAGAGCCCAGTTTTCGGTTTGGACCTTCCTGT TGGCCTCTGCTTCCGTGCCATCTAGCAAAGGAGTTCCTAATCTCTAGAGG GATACAAATGACTAGTCTGCTCCATCTGCCTCTTCCAACATTGCAGGGTA GCTCCCAGGGAGAAGAGTCAGTGAGTGGTTCCCAGAGAACATCCAGTATC T