view rnaseq/cutadapt/test-data/extract_genomic_dna_out5.fasta @ 11:a712b378e090

cutadapt added
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 16:33:42 +0100
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>mm9_chr10_62044837_62045189_+
AATTACAAGATCGACACACCAAGATAGGCAGATCCATGGTTGGTTTTACT
TTGTAAATCTAAAAGTATGTTGGAAAACGATGCAATGAATTCTTATCCTT
TTTCAAAATGAAGAATTTGTGATGGTTAGTGGACAGTTCAGAAGCCTCTC
TGCAAGAAAGGGGGCGCTGAGAAGTGGTAAAAAAAGGAAGGAAGCACTCG
GGCTTTGTCAGCAGGGTGGACCCTGGGGTCCACAGTGGGAACAGTCCCTT
CTGGCCTCTACTCACTGACCAAACGCTTTACTAAAACTCCGCTTCTGGCC
TCTGTTGCCACCTCCTGGTCGCTGTCCTCGGAAGTTTCTACTTCCTCCTC
GCT
>mm9_chr10_75372919_75373002_+
GCGTCTCGCAGCTTCTGCCCGTCGATCTCCATGTCGAGCCGGATGGGCAC
CAGCACCTCAGGCTGTGACGCATTCTCATGGATC
>mm9_chr10_80362428_80363292_-
ATGACGGACAAGTGTTTCCGGAAGTGCATCGGGAAGCCCGGGGGCTCCTT
GGATAACTCGGAGCAGGTGAGACATCTCGGGAACCCGGGGTGGTGAGGGG
CGCGGGGTCAGGAGCGTCTAGGAGGTTGAGAGATGTGCGCGTGCGCGGCC
TCTAGCCTTAGCTACTGAGGAAGTTGTGCGCGTGCGCGGGGTGAGGACCC
GGCTTCTGTGCCTAGATCGGTGCAGCCTTCATGGGTGATCCTCGGGTCGT
GTGACCGTCAGTCAGGGATCCCCCTCCACGCTTTGCAGAAATGCATCGCC
ATGTGCATGGACCGCTACATGGACGCCTGGAATACCGTGTCCCGCGCCTA
CAACTCTCGACTGCAGCGGGAACGAGCCAACATGTGACCGGGACCTGTGC
CTCGGGACACCGTGCTTATGGTCTGAACTGTTTTCCCTGCCAGTTAGGGT
GTCTCCTCCTAGCCGCCCTGAAGTCTGGCAGCATGGAGGGCTTGGGGATC
GAGGCCTCTCCCCTGGGTTGCTGCGTCCAGCTCAATCTCAGAAGAGAGTG
AGGACCCGACAGAGCACAGGGATCTGGCTGGCCCCACTGACCTGTGACCT
CAGGAGAGCAGGCCAATAAATCGCTGCTGGGGCAGTAAAGCAGGCGTGTC
ACCTCACTGCTTCAGGTCCCTTCCCCTGAGTAGGCCCAGACCTCCCAGGG
TATCTTTCCCCTTGGGGTCAGTGGGCTGCTGGCTCTCAGGGAATTCGGAG
CATGATCTCAGGTGTTTGGTCATCCCGGGGAGACCAGCCGAGGTTAAGAA
GCAAGGCTTCATGTagccttcacctatcatgcatgaggcccagggtgctg
accttaactctgaat
>mm9_chr11_7904565_7904642_+
CATCTTCTATTTGAGCCTCCATCCAGGCACCTCTGAAACAAAGGTGCACT
CACTGCATGTCCACTTGTCACAGGAGCC
>mm9_chr11_78140156_78140259_+
CTGCTTGCTAATTTTCTCTCTTGGGATCAGGGGGACGTGAACTCCAGCCC
TGACTCGTGCTCCTTATGCTCTGAGTACATAGCAAATAAATGAGAGCAAA
ACAC
>mm9_chr11_105616462_105616737_+
TAGGTGTAATAGTGGAAAACAATAGTTTTTAAACTTCAGAGTCCAGGGCT
GTAACTCAGTAGTAACAGTGTTCTCTAAGTATGTTATTCTTCCTCTACAT
GCTGAAATTTTTCATATTTGGAGCATTCACTGTTCCATGTATCAGTAAAT
TATATTGTGAGCTGTCATCATATCTAAGCACCATATTGAATATTTTTCAT
GATTAAAATTTGTTGAAACAACAATTCTATGACCGAAAAAAGCAAGGCTT
TGTAAATAACATGTTTGTTACTAGTA
>mm9_chr12_30701762_30702509_+
TGTGGAGTGTACTTATATGATCCCTATGCTGATAGGATTACCTTCCTAGA
CATAGCTAGACGCAAAGCCACATGTGTAAGGCTGCTGAGCAAAGACAGCA
TCCCAGCATGGGTGTGTTCACGGTGGATTCACCACGTTGCATATGTAAAG
TGGTCCCCTTGGCTTACCCTTCACTTTGCTCATGAGATTCAGAAGCTGGT
GGTCCAGCAGGGGTGAGCATTTGTGAAATAGTAAGCTGAACTTAGTGGTG
AGATTTCAGAACAGACTTCTGTGAAGTAAGAGATGTAACCATGCATCTAA
AATCAGATGGCCGTGTAACTGCTCGGGCATAGAAATGGTGGGAGAACCTG
TCCTGGGTACCTGGCATTTCACATGAGCCCAGGGATATGTCTTGTGCCAA
GGCACACAAGTGTCCATGGACTTGGACAGGTGCCAAGGGTTTTTGTCTCT
GTTCCTATGTGGGAGGCTGGCTGTGATTTACATTAATTTCTGTATTTCAA
ACGAAGATGTCTGCAGATCTCCATTTTGATGTTACAGCCTCATTGCCCAG
GCAGTGGGCAGTGCCCAGACACCCTTTCTGACTAGCCACTGCATTGGGCT
TCTGTGATTCAAAGTAGTGTATATATTTATTTACTTCTCTGACTGTGGCC
AACAGCCAAATGCCATTTTATGTTCCTTGTATTCAGTCCATTACCAAAGA
GGTGTTTGCACTTTGTAATGATACCTTTCAGTTCAAATAAAAGGACCA
>mm9_chr13_49159496_49159569_+
ttttcttttggattacttgatttttttttatttgatcttatttatgatga
ttttgagtacatttttgaacagtt
>mm9_chr13_100200304_100200330_+
TCTCATATGAATAGCCACCCTCTTCTG
>mm9_chr14_31949103_31949152_+
GGATGCTATCCGCGATGTGCATGTAAAGGGCCTCATGTACCAGTGGATCG
>mm9_chr14_67604227_67604668_+
TTCACCGTGAGAGTTTTCTCCATTTCACTCTTCACTGTGCTGTTCTCTGT
GCCGCTTTCCTCTTGACTTATAAACATCTGAGCCAGTTTTCAATAAACTT
AAAACGAAGCCTGCTTCTCATCCCAAATTGTAAACAGGAATAAAGCTTTT
TAAACCTTATCTTAAATTTTAACTTTGTTGAATTCTGCTTTGTGATAGGA
CAATCTGTTTCACCCAACAAGAATCTGTGTAGGAGGATGAACATCCCGCA
TGTTGGAGCTGCAAATCAGCACTGTACAAGCTCACTGATGGACAGCTGTT
CTGTGATGTATTCCATGATTTTACTAATACTTTCAAAAATGGCAAAACTA
ACTTCAGTTTTAATGTTGAAAGAAAATCATAAATGTTCCCATAGTTCAAT
GGCACTGTCGATGAAACTGCTACTGAATTTAGAGAGAAAACG
>mm9_chr14_75165582_75165744_+
ggccctgggatgataTAACAGAAGAGTCTAAAGGAGGCTTCTGAGATGTG
CAGTAGGAAAGCCTGGCACATAATAGGTTATTATCTAAATCCCTTCACTA
CTCTTCAAAGACAGCAGGATGCCTCTGCTCCCATGTTTTATCTCTACTTA
TGTGGAATTTATG
>mm9_chr16_57154027_57154067_+
GTTGAGGTTTATTTAAGTAAAATGATTTTTTAAAAAAGCAA
>mm9_chr16_74862302_74862560_+
GCATTGGCAGCAGATATTGGTACCCAGTGGCACTGCAGAGTACTTACAAT
CAGGACTCGCTACTGTGCTTCATTCTGCTTTTCTCTCTGCTTCTATTACA
GTTAAAGTGTTGCTAATTATAGAAACTCTCTGTTTATTGAACCTCGGTGT
TAAGAAAAACTTGTAATCTTCAGATATGATCCGAAAGATTCCCAAACAAA
TGTAACAAGGTCCACTTTTGTAGCCCTTTCTACCAGAAcactggttatca
acctgtggg
>mm9_chr16_98168779_98168914_+
CCTATTTATTTCACTAAACATCTGCCTGCTAGCTGAGATAAACATTCTCT
AAAAAACTGTTTACTGCAAAAAGTGATTACTGTTTTTTATTAGTTTCTTA
GCATTTGAAATAGTTACATGAATGGAAGGATAGAGT
>mm9_chr17_8483212_8483268_+
AGACTTGTCAACAGCTCACCCAATGATGGAACTGAGGCTGCCCCTCAAGT
GGCCAGA
>mm9_chr17_30355791_30355913_+
atctcatacccataagctcagaactcggggtggtaacataggaggactgc
catgagtgtgactaacctgggctataggaggaggatctaccttaagcaaa
tgaCCAACAAAACTAACAAGCTC
>mm9_chr18_39571718_39571880_+
TATAACATTCCATAAATGTACAATAATCTATTTTTGAGAAGCTCATTTTG
AAACTTAACACTGTCATTGATAATCTTCAAGTGGTATTTCTTAGGCACCA
TAAATTTCACATCCAGCTGGGTTACAATTATTTTAAAGTACTTTGAGACC
AATTTAAACCATT
>mm9_chr19_17633088_17633203_+
TGGGAAATGAACTGCATGGCAATGAACCCCAGGGAATTTGGTGGTTAATT
GTCTAAGGATAAGGACATCAGTTTTGTCTTTTGCATCACTGTGACCTTTG
CCTCTAATTGTATAGA
>mm9_chr19_41997624_41997859_+
gctacacaacgactcacatagagggaagcaggcacacatcagataaaaca
cAAAAGGATGGGTTGGTGATGGGCATAGTTAATGAGGGCCACTAGGTAAA
TACACCTGATCCAAAAGTCACGCTACTACTTAGATTCTTCTCTCTGCTAA
AGACAACAGAAgacatgttagccatgcttgtaatccctgcattggggaga
tggagtcagaaatatcactgcaagttcacccaatag
>mm9_chr19_56516515_56516684_+
TGTATTCATTCACTATTCACTGATTTGTCAGATCATCCATCCACACAGGT
GCTGAAGAGTAACCCATTTCACTTTGTATACAAGATAATGTTTTTGTACT
TCAAATACATCTGGAATTCTTTCAAATATTCCAAGATTTTTTTTTTTTCT
GAATAATCTTTGGTTACCTC
>mm9_chr2_4543774_4543977_+
gagccatttctccagccccTTTATGTGGAATATTAACAAGAGAAGACAAC
ATAAAATGACTTACCATGCTGTGTGGCCTAACAGTGGATGAAGAATGAGT
GATTTGGGCATTTCTGATAGTATTTATAAAGAAGACTTTTATGACCAAAC
CACATGTCACAGTAGGGATTTGCTGCACATCTTATGAGAGTTTCTTCTTT
GTCA
>mm9_chr2_30200331_30200938_+
CGCACACAAAGGATTTATTTGCCAGAGAGCAAGCAGACAGGCAGAGGTCA
GAATGTTAGTTAGAAACTGAAGGAATGACTGCTGTAGCCACTGTGCCCAG
CCAGAGCCATGAGGGAAGTGGGAGGCAGCACTTGGTGCTGCTGCTCTGGC
TGACCCTTCTGGTTTCCTGCCACACTCCTAGCCCTGCCTGTGTGCTGCTG
TCCCCCTCAACCTTCCACAGCCAGAAGGCAGATGTTCTTTCATGCCAAGA
GCATCCATCCCCAGCATATCCTGGGCCCATGGTGGTGTCAAATGTAGTGA
CCCTTCTGCCTTAAGGGAGCTGGGAAGCCTGGGGTGTGCAGGGTTGCAGG
TCAGAAGCAGGACTAGCAGAGGGGCCTGGGGCCATTCTGTCTTGTGGGCT
CTTTAATAGCTGAATGACGGGCACAGCCAGAAAAGGGTTAGGTCCCTTAT
CCTAAGCAGCTCTGTGGCCAGCAGACGACTCTAAGTGGCAGAGCCTGGGA
AGGGGCTGCTTAGCTGAGAAGTTCCAGGTAGGTGACAGGAACCTTGCCCT
TCTTGTTGCCTCTCTCACCAATGAGCCAGTCGGGATCCATGCCTGGCAGG
CTGTAGAC
>mm9_chr2_106644220_106644341_+
attcttaaggtaaatacctaggagtgatgtaacccagtcatagggaagaa
ctacttttaatttgttgagcaacccccaacctgattttgacacaggtttg
agtagtttacacttctactaac
>mm9_chr2_125388931_125389219_+
AGAGCACACAGCACATCACTTAGGCCTCCAACATTAAGGCAGCGCAAGTG
CCTCAAGTAACTGAGAATACTTTACTCAGATACAAGGGTATCAAAAACAT
GAGAACTGGCAGGAAGACCTCACAATGGTTTGTTAGCATCAAGTATTACC
ATCCAGTTTCCTGTTTAAATAGTAATTAATGACTATTCTGAAATAAGGCA
AATAATTACTCAAGCGGGCTGTCAAAGCCACTATCCTGTTGGCTGGGCAT
CGGAGCAGTTAACTTTATCAAAGGCTTCTGACACAATGA
>mm9_chr3_130936639_130936898_+
CGAGGCTGCAGGCTGCAAATGTTCCCAGGCAGGCAAGACCTCACGTCCTA
CTGGCTGCTGCCCTTGGGTGCATCTGTAGGCCCCGTGGCTCCTGCCCCTG
GGGTTCAACACCGATAAACATAGAATACTCATTTTCAGAAGACCTGAGGG
AATGAGTCTAAGCAACGCTTTTTACAAAAAGTGGCAAGGTTCAGGAAAAA
AAAAAAAAAAGATGTTGCTCCAAGGCACCAAGGGTGTAATTTTTTTTCAG
AAAAAGTCAG
>mm9_chr3_136592671_136592771_+
TGTCAGCCCATCACATTTTAGTGACAACAGTCATAGCCTTTATTTTCAGA
TGACTTTCCTCTAAAACCACTGTCTATGAGTTGCCCCCCAAAACTCAAAA
A
>mm9_chr3_152861374_152861508_+
ATCAAAAGCGACATGCAAGCATCTTGCTCTCACCACAGATCACTGAGACA
TTAAGAGTGACGTCTCTTGAACTGTTGGCACGCCTAAGTTATTTCAGCAT
TTCTTGCTCAGCAGTTGTTCTCTTGGCTTCCTCTG
>mm9_chr4_13715310_13715630_+
AACACATGGCCACATCATGTGATATTTTCAAAACACTTACACATAGCTTT
GAGAAGGTCCCTGCAGGAATGATCCATCCTCTCACAGTTGGCCCATTTTT
TAACAGCATATCTGCATTTTCCATTTAGGAGAGCTATATATTATTAGCTT
ACATTTTTGGGTAGTAAAACAGTGCATTGCTGATTGTAAAACATGGACTT
TATTATCTGCTGAAAATTGATTTGGCATTTATAGCCACTGTGTATTAGAC
TGTTTTTCTGTTTTTAACATCAATGCTTAAAAGCGATGATTTGTGTTTaa
aaaaattaaaaaaataaaata
>mm9_chr4_147515029_147515097_+
GCTGACGTGCTCTCCGAGTTCCTGGAGGTGGCCGTGCACCTGATTCTCTA
TGTGCGCGAGGTCTACCCG
>mm9_chr5_3949522_3949685_+
AGTCCCAACCACCCCCTTGTTTAATGTATAACTTTCTGAAATGGGAGCGT
TAGAATGGATTAAAATGGTTGGTAGGTGGTTGGATCACCAACCAAGACCA
GAAATAGAGGGGTAGGCTGCTCAGGAGAGTATTGGGAGGGTAGCTATTAT
TTGCATTTTGTGCT
>mm9_chr5_68089694_68089831_+
CAATGATAGAGAAGACTAAAATAAAAGCAGGCATGCTGGCACAAGCGACA
GAAGGAAAAAGCCTCACCCGGCCCTGTTTGAGGCCACTCCTGGTGGCTCC
TTTTCCAAGGACCATGCGGTCAAGCCTCTGAGTTGTTC
>mm9_chr5_122819526_122819619_+
CTTTAGAAAAGATGCATCTGTCATTGATTTAGGGATATGAATTGTTTGGA
TTTGAGTAGTTTTCCATAACTCCTGCAGTTTGGCAATGTGTGCG
>mm9_chr5_145619548_145619710_+
CGGCGTTCTGAAAACTGTGCTCCGGGATGAGATCATTGCTTGGCACAAAA
AGACACAGGAGGACACTTCCTCTCCACTGTCGGCCGCAGGGCAGCCTGAG
AACATGGACAGCCAGCAGCTGGTTTCCTTAGTTCAGAAAGCCGTCACTGC
CATCATGACCCGC
>mm9_chr6_83928984_83929105_+
ACAGGAACCATTATTTACATTTAATTTGGATGAATTTGTTACTGTGGATG
AAGTCATAGAAGAAGTAAATCCTTCTCAAGCCAAGCAGAATCCATTAAAA
GGAAAAAGAAAGGAAGCCCTCA
>mm9_chr6_118857949_118858148_+
CCAGGCTTGCTAGTTGGTGCAGTTAGCTACATCTCAGGACAGAGACAAGG
TACTCTGAGCTCCCCTTGAACTGCCACACAAGCTGTCTCCTGGATGCCAA
GCAGAGAAACCTGGAGACAACAATCATCATACTCAAAACCAGGATCTCTT
TCTTAAGACTTTTGTATTTTGTCCCAGCCCTAACCCTGAGTTCTGCTGAA
>mm9_chr7_85554210_85554343_+
GTGAAACATCATGCTTCTGCATCAAGTTATTAGTGGGAAACCTGTAAAAG
TTGACATTGAATGCTGATAACAAATTACTTTCATCCTGTCTCATAATGAA
TCCTACATCAAGACAAGGCAAGTGAGAAAGAGGG
>mm9_chr7_104055491_104055589_+
ACATTTCTCCTCTCTTGGGGGAGCGCATCTCCTTGGGTGTGTCCACATCC
GCCCCTAGGTACCCAGTGTGATGTGAGACACGAGTGTCTGTGCTAACTT
>mm9_chr8_9970398_9970545_+
AGTCTTCACCAAAATTAAGTCTCAGCTAACTTAAAAGTTGCAAGGATTTT
TTTCAATAAAATTAATATCTTAAGTGTTTGGTGTTTAGATGATTCTCTCT
CAACTTCCCCCACATTATCAAAAAACATTTGATGAACCTTAAAAACTC
>mm9_chr9_20449846_20449932_+
CCAGCACCGATGACACCATCGGCGACTTGAAGAAACTGATAGCTGCTCAA
ACTGGCACCCGCTGGAACAAGATCGTTCTTAAAAAGT
>mm9_chr9_107445870_107445930_+
CAAGCAGAAGCTGGTGCCCATCATGACCATCCTGCTGGAAGAGCTGAATG
CCTCCGGCCGC
>mm9_chr9_120860476_120860606_+
CTGCCATTGTACGCACCATGCAGAATACAAATGATGTAGAGACAGCTCGT
TGTACTGCTGGGACTCTGCACAACCTTTCTCACCACCGCGAGGGCTTGCT
GGCCATCTTTAAGTCTGGTGGCATCCCAGCG
>mm9_chrX_10274057_10274087_+
ACTTCGCTGTCATCATTTGTACAAACTCTTT
>mm9_chrX_39881431_39881678_+
AGCTAAAAAGAGTCCTTTTCTGACAGAAAGGCTGGACTTCTCCTTTTCAC
CGTTTCTCTTACTGATGCTTTTGCCAGAAGAACAGTAAAGATTTAGACAC
TGTCATGATTCATACACGTAAAATATTTTTCAAGGACACAATCTGATATA
CTAACATTTATTTAAGAGGTTAAAGTCCACCACTAAATCTAAGGAAAGAT
TTTTAACTGCCAAACACATTTCCTTTGACAAATAATGTAAGATGACAA
>mm9_chrX_148249672_148249713_+
AATGCTAGTATGAACAGTGGGAGGAATGAGCAAAATGTTACA
>mm9_chrX_148481505_148482455_+
CGCCACAACCTGCTACAGGCCTGTAAGATGCAGGACATCAAACTGCCACT
GTCAAAGGGCACCATGGATGATATTAGTCAGGAAGAAGTGAGTATTATGG
TGGGTGGTAGGAGTCATCTATGAATATTTAACCAGTAATGGGAGATTACA
GATGGCCAGGAAGGGCAGGCAACAGATAGGACCACATAGAGTTGTGAGGG
GCATAAAGATGGATGCAGAAGAAATGTGGCAAGGTGGAAGTAGTGAAGTC
AGGCTTTGGTATGAGAGAGACATTGATTTGAGAGGAGAGCTGCAAGCCAG
TGAGTACTCAGAAAGACCAAGAATGGGTCATTAATCTTAAGGATTTGAGC
TCTTAGCTGCAGCAGATACTGGGCATGGGTAGGAGTGAGAATTGAGGAGC
AGAGGAAGATGGGAAACTGGAGAACCTAAGGAGACTGATAGCTTAGCTGC
AGTAAGGGAGGTTGGCCAGAAGAGGGTTGGGTAGGGGACTCAGCAAGGCA
GAACTAAGGAAGCTTAGGTGGAGGGGAAGGAACAACATCTGAGCAACTAA
AGCACTCTATCAACTGGAAGTGCAAGATGGTAGTGAGGGGTGGACAGGTG
TAACTGAGTAACTCTTTGTAGGTAGCCTTTCAGTTTAATTCAGTAAAATA
TTTTGAACACTAGTATTCCAGATACTGGTAGGCCATGACTTAACCATTCC
TAATGTTAATCTCAGCTGTGCTAGCTGAGCTTGTGTTCACATTAGACATG
AAGAAACTTAGTAAAAGGTAGAGCCCAGTTTTCGGTTTGGACCTTCCTGT
TGGCCTCTGCTTCCGTGCCATCTAGCAAAGGAGTTCCTAATCTCTAGAGG
GATACAAATGACTAGTCTGCTCCATCTGCCTCTTCCAACATTGCAGGGTA
GCTCCCAGGGAGAAGAGTCAGTGAGTGGTTCCCAGAGAACATCCAGTATC
T