Mercurial > repos > jjkoehorst > sapp

diff sappDocker/pathwayAnalysis.xml @ 31:957156367442 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jjkoehorst
date Wed, 29 Jun 2016 01:36:58 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sappDocker/pathwayAnalysis.xml	Wed Jun 29 01:36:58 2016 -0400
@@ -0,0 +1,12 @@
+<tool id="DPathway" name="Pathway analysis" version="0.1">
+	<description/>
+	<command interpreter="docker">java -jar /pathwayanalysis/target/pathwayAnalysis-0.0.1-SNAPSHOT-jar-with-dependencies.jar -input $input -output $output -format TURTLE</command>
+	<inputs>
+		<param format="ttl" label="Annotated RDF file" name="input" type="data"/>
+	</inputs>
+	<outputs>
+		<data format="tsv" label="PathwayAnalysis: ${input.name}" name="output"/>
+	</outputs>
+	<help>Pathway overview information for MetaCyc and KEGG
+	</help>
+</tool>
\ No newline at end of file