--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rnaseq/cutadapt/test-data/codingSnps_inputGenes1.bed	Sat Feb 21 16:33:42 2015 +0100
@@ -0,0 +1,20 @@
+chr1	67051161	67163158	ENST00000371026	0	-	67052400	67163102	0	17	1290,157,227,99,122,158,152,87,203,195,156,140,157,113,185,175,226,	0,9470,13929,14921,20694,21100,22735,24819,27578,34593,49256,58479,61890,78263,80338,92310,111771,
+chr1	67075869	67163055	ENST00000371023	0	-	67075923	67162979	0	10	198,203,195,156,140,157,113,185,175,123,	0,2870,9885,24548,33771,37182,53555,55630,67602,87063,
+chr1	1843259	1849228	ENST00000378596	0	-	1843585	1847183	0	10	428,135,161,133,155,130,156,120,56,1278,	0,628,1024,1406,1814,2430,3822,4267,4496,4691,
+chr1	1874611	1925136	ENST00000270720	0	-	1876876	1912255	0	18	2538,165,90,67,119,174,156,199,158,103,111,174,105,99,144,85,86,137,	0,3307,5807,6651,10436,11575,13058,15322,17346,18667,19624,20712,32073,33624,35199,35576,37577,50388,
+chr1	1838889	1840572	ENST00000310991	0	-	1839180	1840564	0	5	572,179,42,44,92,	0,662,1302,1454,1591,
+chr1	1838888	1840096	ENST00000378602	0	-	1839180	1839855	0	2	573,545,	0,663,
+chr1	1672537	1699769	ENST00000344463	0	-	1674202	1686705	0	14	1822,83,158,100,155,103,86,155,204,143,169,84,219,182,	0,2328,2812,3045,3305,4135,5019,5264,5868,7862,8495,10713,13989,27050,
+chr1	1836125	1838593	ENST00000307786	0	+	1836579	1838492	0	6	481,51,175,145,101,148,	0,858,1614,1925,2147,2320,
+chr1	1672530	1701368	ENST00000378625	0	-	1674202	1686705	0	14	1829,83,158,100,155,103,86,155,204,143,169,84,219,165,	0,2335,2819,3052,3312,4142,5026,5271,5875,7869,8502,10720,13996,28673,
+chr1	1672537	1699769	ENST00000341426	0	-	1674202	1686705	0	12	1822,83,158,100,155,103,86,106,130,84,219,182,	0,2328,2812,3045,3305,4135,5019,5264,5942,10713,13989,27050,
+chr1	1540746	1555847	ENST00000378710	0	+	1540873	1555773	0	19	130,107,311,172,107,195,143,105,163,134,149,157,161,127,234,179,182,66,313,	0,1004,7885,8270,9291,9487,9782,11146,11333,11570,11792,12169,12515,12769,12985,13629,13881,14135,14788,
+chr1	1672530	1700089	ENST00000341991	0	-	1674202	1686705	0	12	1829,83,158,100,155,103,86,106,130,84,219,45,	0,2335,2819,3052,3312,4142,5026,5271,5949,10720,13996,27514,
+chr1	1540746	1555847	ENST00000355826	0	+	1540873	1555773	0	20	130,107,311,172,107,195,143,108,105,163,134,149,157,161,127,234,179,182,66,313,	0,1004,7885,8270,9291,9487,9782,10042,11146,11333,11570,11792,12169,12515,12769,12985,13629,13881,14135,14788,
+chr1	1836125	1838593	ENST00000378604	0	+	1836579	1838492	0	5	481,175,145,101,148,	0,1614,1925,2147,2320,
+chr1	1540746	1555847	ENST00000357882	0	+	1540873	1555773	0	19	130,107,311,172,107,143,108,105,163,134,149,157,161,127,234,179,182,66,313,	0,1004,7885,8270,9291,9782,10042,11146,11333,11570,11792,12169,12515,12769,12985,13629,13881,14135,14788,
+chr1	1540746	1555847	ENST00000357882	0	+	1540873	1555773	0	19	130,107,311,172,107,143,108,105,163,134,149,157,161,127,234,179,182,66,313,	0,1004,7885,8270,9291,9782,10042,11146,11333,11570,11792,12169,12515,12769,12985,13629,13881,14135,14788,
+chr1	67075991	67163158	ENST00000395250	0	-	67075991	67113089	0	11	27,45,203,195,156,140,157,113,185,175,226,	0,31,2748,9763,24426,33649,37060,53433,55508,67480,86941,
+chr1	201326404	201403155	ENST00000309502	0	+	201364592	201401651	0	6	81,18,100,155,398,2144,	0,1039,37175,37624,38131,74607,
+chr1	8335052	8508585	ENST00000377464	0	-	8337733	8508430	0	17	2715,181,147,721,223,1379,114,162,200,93,163,81,99,100,125,49,181,	0,3013,3694,5790,7358,7706,9357,10277,11650,12340,13406,70321,113519,142657,144999,156220,173352,
+chr1	8335054	8800286	ENST00000400908	0	-	8337733	8638943	0	23	2713,181,147,721,223,1379,114,162,200,93,163,81,99,100,125,49,105,97,106,126,71,469,481,	0,3011,3692,5788,7356,7704,9355,10275,11648,12338,13404,70319,113517,142655,144997,156218,188805,204066,205009,262152,271901,303564,464751,