Mercurial > repos > jjohnson > bamutil_diff

annotate test-data/diff.sam @ 0:2cafa8420c04 draft default tip

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"planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
author jjohnson
date Fri, 26 Mar 2021 13:16:53 +0000
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2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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1 @HD VN:1.0 SO:coordinate
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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2 @SQ SN:1 LN:248956422
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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3 @SQ SN:2 LN:242193529
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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4 @SQ SN:3 LN:198295559
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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5 @SQ SN:4 LN:190214555
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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6 @SQ SN:5 LN:181538259
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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7 @SQ SN:6 LN:170805979
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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8 @SQ SN:7 LN:159345973
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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9 @SQ SN:8 LN:145138636
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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10 @SQ SN:9 LN:138394717
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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11 @SQ SN:10 LN:133797422
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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12 @SQ SN:11 LN:135086622
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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13 @SQ SN:12 LN:133275309
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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14 @SQ SN:13 LN:114364328
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
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15 @SQ SN:14 LN:107043718
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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16 @SQ SN:15 LN:101991189
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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17 @SQ SN:16 LN:90338345
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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18 @SQ SN:17 LN:83257441
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
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19 @SQ SN:18 LN:80373285
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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20 @SQ SN:19 LN:58617616
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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21 @SQ SN:20 LN:64444167
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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22 @SQ SN:21 LN:46709983
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
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23 @SQ SN:22 LN:50818468
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
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24 @SQ SN:X LN:156040895
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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25 @SQ SN:Y LN:57227415
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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26 @SQ SN:MT LN:16569
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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27 @PG ID:hisat2 PN:hisat2 VN:2.1.0 CL:"/panfs/roc/galaxy/shared/miniconda3/envs/mulled-v1-e7321ba46fa5ea4c6b9a06b78e6cd5182b33c0a47c2c86b5d610e1361f8b1686/bin/hisat2-align-s --wrapper basic-0 -p 4 -x /panfs/roc/risdb/galaxy/genomes/GRCh38_canon/hisat2_index/GRCh38_canon/GRCh38_canon --pen-cansplice 0 --pen-noncansplice 12 --pen-canintronlen G,-8.0,1.0 --pen-noncanintronlen G,-8.0,1.0 --known-splicesite-infile splice_sites.txt --min-intronlen 20 --max-intronlen 500000 --dta -1 input_f.fastq -2 input_r.fastq"
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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diff changeset
28 @PG ID:hisat2-55424A4 PN:hisat2 VN:2.1.0 CL:"/home/galaxy/galaxy/miniconda2/envs/mulled-v1-e7321ba46fa5ea4c6b9a06b78e6cd5182b33c0a47c2c86b5d610e1361f8b1686/bin/hisat2-align-s --wrapper basic-0 -p 4 -x /panfs/roc/rissdb/galaxy/genomes/GRCh38_canon/hisat2_index/GRCh38_canon/GRCh38_canon --pen-cansplice 0 --pen-noncansplice 12 --pen-canintronlen G,-8.0,1.0 --pen-noncanintronlen G,-8.0,1.0 --known-splicesite-infile splice_sites.txt --min-intronlen 20 --max-intronlen 500000 --dta -1 input_f.fastq -2 input_r.fastq"
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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29 @PG ID:hisat2-55424A4-3A2CCEF5 PN:hisat2 VN:2.1.0 CL:"/panfs/roc/galaxy/shared/miniconda3/envs/mulled-v1-e7321ba46fa5ea4c6b9a06b78e6cd5182b33c0a47c2c86b5d610e1361f8b1686/bin/hisat2-align-s --wrapper basic-0 -p 4 -x /panfs/roc/risdb/galaxy/genomes/GRCh38_canon/hisat2_index/GRCh38_canon/GRCh38_canon --pen-cansplice 0 --pen-noncansplice 12 --pen-canintronlen G,-8.0,1.0 --pen-noncanintronlen G,-8.0,1.0 --known-splicesite-infile splice_sites.txt --min-intronlen 20 --max-intronlen 500000 --dta -1 input_f.fastq -2 input_r.fastq"
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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30 @PG ID:samtools PN:samtools PP:hisat2-55424A4-3A2CCEF5 VN:1.11 CL:samtools sort -@ 1 -m 10240M -T sorttemp -O sam -o 0.sam /panfs/roc/galaxy/PRODUCTION/database/files/001/075/dataset_1075444.dat
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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31 @PG ID:hisat2-3A2CCEF5 PN:hisat2 VN:2.1.0 CL:"/home/galaxy/galaxy/miniconda2/envs/mulled-v1-e7321ba46fa5ea4c6b9a06b78e6cd5182b33c0a47c2c86b5d610e1361f8b1686/bin/hisat2-align-s --wrapper basic-0 -p 4 -x /panfs/roc/rissdb/galaxy/genomes/GRCh38_canon/hisat2_index/GRCh38_canon/GRCh38_canon --pen-cansplice 0 --pen-noncansplice 12 --pen-canintronlen G,-8.0,1.0 --pen-noncanintronlen G,-8.0,1.0 --known-splicesite-infile splice_sites.txt --min-intronlen 20 --max-intronlen 500000 --dta -1 input_f.fastq -2 input_r.fastq"
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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32 @PG ID:samtools-6ADB4A65 PN:samtools PP:hisat2-3A2CCEF5 VN:1.11 CL:samtools sort -@ 1 -m 10240M -T sorttemp -O sam -o 1.sam /panfs/roc/galaxy/PRODUCTION/database/files/001/075/dataset_1075446.dat
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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33 @PG ID:samtools.1 PN:samtools PP:samtools VN:1.11 CL:samtools merge -@ 1 -s 1 -f -h /panfs/roc/galaxy/PRODUCTION/database/files/001/075/dataset_1075446.dat /panfs/roc/galaxy/PRODUCTION/database/files/001/075/dataset_1075450.dat 0.sam 1.sam
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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34 @PG ID:samtools.2 PN:samtools PP:samtools-6ADB4A65 VN:1.11 CL:samtools merge -@ 1 -s 1 -f -h /panfs/roc/galaxy/PRODUCTION/database/files/001/075/dataset_1075446.dat /panfs/roc/galaxy/PRODUCTION/database/files/001/075/dataset_1075450.dat 0.sam 1.sam
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
parents:
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35 @PG ID:hisat2-6ADB4A65 PN:hisat2 VN:2.1.0 CL:"/panfs/roc/galaxy/shared/miniconda3/envs/mulled-v1-e7321ba46fa5ea4c6b9a06b78e6cd5182b33c0a47c2c86b5d610e1361f8b1686/bin/hisat2-align-s --wrapper basic-0 -p 4 -x /panfs/roc/risdb/galaxy/genomes/GRCh38_canon/hisat2_index/GRCh38_canon/GRCh38_canon --pen-cansplice 0 --pen-noncansplice 12 --pen-canintronlen G,-8.0,1.0 --pen-noncanintronlen G,-8.0,1.0 --known-splicesite-infile splice_sites.txt --min-intronlen 20 --max-intronlen 500000 --dta -1 input_f.fastq -2 input_r.fastq"
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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36 @PG ID:samtools.3 PN:samtools PP:samtools.1 VN:1.11 CL:samtools merge -@ 1 -s 1 -f -h /panfs/roc/galaxy/PRODUCTION/database/files/001/075/dataset_1075454.dat /panfs/roc/galaxy/PRODUCTION/database/files/001/075/dataset_1075523.dat 0.sam 1.sam
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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37 @PG ID:samtools.4 PN:samtools PP:samtools.2 VN:1.11 CL:samtools merge -@ 1 -s 1 -f -h /panfs/roc/galaxy/PRODUCTION/database/files/001/075/dataset_1075454.dat /panfs/roc/galaxy/PRODUCTION/database/files/001/075/dataset_1075523.dat 0.sam 1.sam
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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38 NB500964:249:HHLFNBGX7:4:12608:21020:10228 419 6 52995635 1 75M = 52995715 155 CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGCTAGGCGGGTGTCCCC AAAAAEEAEEEEEEEEEEEEEEEEEEEEEEEEEAEEEEAEEEEAEEEE<EEE//<AAEAAEEEE<AAE/EEEEAE AS:i:0 MD:Z:75 NM:i:0 NH:i:2 XN:i:0 XM:i:0 ZS:i:-11 XO:i:0 XG:i:0 YS:i:-5 YT:Z:CP ZF:i:163
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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39 NB500964:249:HHLFNBGX7:4:23603:22568:16607 419 6 52995635 1 75M = 52995715 155 CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGCTAGGCGGGTGTCCCC AAAAAEEEEEEAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEA/EAEEAAAEEEEE AS:i:0 MD:Z:75 NM:i:0 NH:i:2 XN:i:0 XM:i:0 ZS:i:-11 XO:i:0 XG:i:0 YS:i:-5 YT:Z:CP ZF:i:163
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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40 NB500964:249:HHLFNBGX7:4:12404:22663:7685 419 6 52995648 1 75M = 52995715 142 CTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGCTAGGCGGGTGTCCCCTTCCTCCATCACC AAAAAEEE//EEEEEE/EAEEEEEEEEEE/AEE/EEEEEEEEEEEEAEAEEA/AEEAEEE<<EE/EEEE/EEAEE AS:i:-3 MD:Z:69C5 NM:i:1 NH:i:2 XN:i:0 XM:i:1 ZS:i:-3 XO:i:0 XG:i:0 YS:i:-6 YT:Z:CP ZF:i:163
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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41 NB500964:249:HHLFNBGX7:3:21407:1974:9687 419 6 52995709 1 74M74N1M = 52995832 124 CTTCCTCCCTCACCGCTCCATGTCCGTCCCTCCCGAAGCTGCGCGCTCGGTCGAAGAGGACGACCATCACCGATA A//AAAE/EE//EE/EEEAAEA//EEEEE/AEEEEEEEEEEEE/E/E6/A/E//A/E/EEEA/AAEAE//EEA/A ZF:i:163 AS:i:-6 MD:Z:23G44C6 NM:i:2 NH:i:2 XN:i:0 XM:i:2 ZS:i:-6 XO:i:0 XG:i:0 YS:i:0 YT:Z:CP ZC:Z:74M66N1M
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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42 NB500964:249:HHLFNBGX7:3:22501:2652:1890 419 6 52995709 1 74M66N1M = 52995788 88 CTTCCTCCCTCACCGCTCCATGTGCGTCCCTCCCGAAGCTGCGCGCTCGGTCGAAGAGGACGACCATCCACGATA AAAAAE/EEEA/EAAEEEEEEEEEEEE/<EEEEAA<EEEE/6EEEEEEEAEEEAEAAE/EEEAEE<EAE/EEE<A ZF:i:163 AS:i:-3 MD:Z:69C5 NM:i:1 NH:i:2 XN:i:0 XM:i:1 ZS:i:-3 XO:i:0 XG:i:0 YS:i:0 YT:Z:CP ZC:Z:74M74N1M
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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43 NB500964:249:HHLFNBGX7:3:22503:25677:1737 419 6 52995709 1 74M74N1M = 52995785 77 CTTCCTCCCTCACCGCTCCATGTGCGTCCCTCCCGAAGCTGCGCGCTCGGTCGAAGAGGACGACCATACCCGATA AAAA/E/AAEAEE/EE/AAAEEE/EEEEEEEEAEAEEEEEAEEEEEAEE/EE//EEE/AEE/AE//E/E/EA/E/ ZF:i:163 AS:i:-3 MD:Z:67C7 NM:i:1 NH:i:2 XN:i:0 XM:i:1 ZS:i:-3 XO:i:0 XG:i:0 YS:i:-5 YT:Z:CP ZC:Z:74M66N1M
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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44 NB500964:249:HHLFNBGX7:3:22611:13268:8039 419 6 52995709 1 74M74N1M = 52995848 140 CTTCCTCCCTCACCGCTCCATGTGCGTCCCTCCCGAAGCTGCGCGCTCGGTCGAAGAGGACGACCATCACCGATA AAAAAEEAEAEEEA/EEEEAAE/AEE/<AEEEE/EEEEAEEE<AAEEAEEEAEEEEEEEEE/AEAEAE/EEAEE/ ZF:i:163 AS:i:-3 MD:Z:68C6 NM:i:1 NH:i:2 XN:i:0 XM:i:1 ZS:i:-3 XO:i:0 XG:i:0 YS:i:-3 YT:Z:CP ZC:Z:74M66N1M
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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45 NB500964:249:HHLFNBGX7:4:13607:25752:7238 419 6 52995709 1 74M66N1M = 52995789 89 CTTCCTCCCTCACCGCTCCATGTGCGTCCCTCCCGAAGCTGCGCGCTCGGTCGAAGAGGACGACCATCCCCCATA AAAAA/EEE/EEEEEEEEEAE/A6AEEEEEEEEEEE/<EEEEAEAEEEE/EEE/EEE/EAEE/AAE/EEEE///A ZF:i:163 AS:i:-3 MD:Z:71G3 NM:i:1 NH:i:2 XN:i:0 XM:i:1 ZS:i:-3 XO:i:0 XG:i:0 YS:i:0 YT:Z:CP ZC:Z:74M74N1M
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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46 NB500964:249:HHLFNBGX7:4:21503:16243:7076 419 6 52995709 1 74M74N1M = 52995838 130 CTTCCTCCCTCACCGCTCCATGTGCGTCCCTCCCGAAGCTGCGCGCTCGGTCGAAGAGGACGACCATACCCGATA AAAA/EEE/EE/AEAEA/EEAA/AAE/EEE/EAEEA/AEEEE<EEEE<<//E/AE/E6EE/</EAAE/<EE/EEE ZF:i:163 AS:i:-3 MD:Z:67C7 NM:i:1 NH:i:2 XN:i:0 XM:i:1 ZS:i:-3 XO:i:0 XG:i:0 YS:i:0 YT:Z:CP ZC:Z:74M66N1M
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
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47 NB500964:249:HHLFNBGX7:3:13604:7137:3437 339 6 52995715 1 68M66N2M5S = 52995637 -153 CCCTCACCGCTCCATGTGCGTCCCTCCCGAAGCTGCGCGCTCGGTCGAAGAGGACGACCATCCCCGATAAAGGAG <EEEEEEEEEEEEEE<EEEE6EEEE<E/EEEEEAEEEEEEAEEEEEAEEEEEEEEEEEEEEEEEEEEEEEAAAAA ZF:i:83 AS:i:-5 MD:Z:70 NM:i:0 NH:i:2 XN:i:0 XM:i:0 ZS:i:-5 XO:i:0 XG:i:0 YS:i:0 YT:Z:CP ZC:Z:68M74N2M5S
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
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parents:
diff changeset
48 NB500964:249:HHLFNBGX7:3:23501:15949:4416 339 6 52995715 1 68M66N2M5S = 52995636 -154 CCCTCACCGCTCCATGTGCGTCCCTCCCGAAGCTGCGCGCTCGGTCGAAGAGGACGACCATCCCCGATAAAGGAG EEEEEEEEEEEEEEEAEEAEEEEEEEEEEEEEAEEEEEEEEAAEEEAEEEEAEEEEEEEEAEEEEEEEEEAAAAA ZF:i:83 AS:i:-5 MD:Z:70 NM:i:0 NH:i:2 XN:i:0 XM:i:0 ZS:i:-5 XO:i:0 XG:i:0 YS:i:0 YT:Z:CP ZC:Z:68M74N2M5S
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
parents:
diff changeset
49 NB500964:249:HHLFNBGX7:4:12404:22663:7685 339 6 52995715 1 68M66N1M6S = 52995648 -142 CCCTCACCGCTCCATGTGCGTCCCTCCCGAAGCTGCGCGCTCGGTCGAAGAGGACGACCATCCCCGATACAGGAG </EEA/EEA/EEA/EEEEAEEEEE/EEAEEEEEEEAE<//EEAEE/EEEEEEAE<AE/6EEE/EEEEEAEAAAAA ZF:i:83 AS:i:-6 MD:Z:69 NM:i:0 NH:i:2 XN:i:0 XM:i:0 ZS:i:-5 XO:i:0 XG:i:0 YS:i:-3 YT:Z:CP ZC:Z:68M74N1M6S
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
parents:
diff changeset
50 NB500964:249:HHLFNBGX7:4:12608:21020:10228 339 6 52995715 1 68M74N2M5S = 52995635 -155 CCCTCACCGCTCCATGTGCGTCCCTCCCGAAGCTGCGCGCTCGGTCGAAGAGGACGACCATCCCCGATAAAGGAG AEEEEEEA<AEEAEEEEE<<EEEEEEEAAEAEEEEEAEEEEEE/EEEEEAEEEEEEEEEEEEEEEEEEEEAAAAA ZF:i:83 AS:i:-5 MD:Z:70 NM:i:0 NH:i:2 XN:i:0 XM:i:0 ZS:i:-5 XO:i:0 XG:i:0 YS:i:0 YT:Z:CP ZC:Z:68M66N2M5S
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
parents:
diff changeset
51 NB500964:249:HHLFNBGX7:4:23603:22568:16607 339 6 52995715 1 68M66N2M5S = 52995635 -155 CCCTCACCGCTCCATGTGCGTCCCTCCCGAAGCTGCGCGCTCGGTCGAAGAGGACGACCATCCCCGATAAAGGAG EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE<EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAAAA ZF:i:83 AS:i:-5 MD:Z:70 NM:i:0 NH:i:2 XN:i:0 XM:i:0 ZS:i:-5 XO:i:0 XG:i:0 YS:i:0 YT:Z:CP ZC:Z:68M74N2M5S
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
parents:
diff changeset
52 NB500964:249:HHLFNBGX7:3:23508:17777:5737 419 6 52995769 0 70M5S = 52995832 138 CGACCATCCCCGATAGAGGAGGACCGGTCTTCGGTCAAGGGTATACGAGTAGCTGCGCTCCCCTGCTAGATCCTC AAAAAEEEEEEEEEEEEEEEEE/EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAE ZF:i:163 AS:i:-5 ZT:Z:AS:i:-5;MD:Z:70A4 MD:Z:70 NM:i:0 NH:i:2 XN:i:0 XM:i:0 ZS:i:-5 XO:i:0 XG:i:0 YS:i:-10 YT:Z:CP ZC:Z:75M
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
parents:
diff changeset
53 NB500964:249:HHLFNBGX7:3:22503:25677:1737 339 6 52995785 1 74M1S = 52995709 -77 AGGAGGACCGGGCTTCGGTCAAGGGTATACGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAACAAGCTCTCAAC EA<E//EEA</6EAEAEAEEAEE/EEE6EEEEEEEAEAEE/EEEEEEA/EEEAEEEEEEEEEE6EE/AEE/AAA/ AS:i:-5 MD:Z:11T62 NM:i:1 NH:i:2 XN:i:0 XM:i:1 ZS:i:-5 XO:i:0 XG:i:0 YS:i:-3 YT:Z:CP ZF:i:83
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
parents:
diff changeset
54 NB500964:249:HHLFNBGX7:3:21407:1974:9687 339 6 52995832 1 75M = 52995709 -124 TGCTAGAACCTCCAAACAAGCTCTCAAGGTCCATTTGTAGGAGAACGTAGGGTAGTCAAGCTTCCAAGACTCCAG EEEEEEE/EEE<EEE/EEAEEEE/A</EEEE6EEAE/EEEAEEEEEEEEEEEEEA6EEEEEEE/EAEEEEAAAA< AS:i:0 MD:Z:75 NM:i:0 NH:i:2 XN:i:0 XM:i:0 XO:i:0 XG:i:0 YS:i:-6 YT:Z:CP ZF:i:83
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
parents:
diff changeset
55 NB500964:249:HHLFNBGX7:3:23508:17777:5737 339 6 52995832 0 75M = 52995769 -138 TGCTAGATCCTCCAAACAAGCTCTCAAGGTCCATTTGTAGGAGAACGTAGGGTAGTCAAGCTTCCAAGACCCCAG EEEEEAEEEEEEEEEEEEEEEEEEEEAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAAAA ZF:i:83 AS:i:-10 ZT:Z:AS:i:-10;MD:Z:7A62 MD:Z:7A62T4 NM:i:2 NH:i:2 XN:i:0 XM:i:2 ZS:i:-10 XO:i:0 XG:i:0 YS:i:-5 YT:Z:CP ZC:Z:70M5S
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
parents:
diff changeset
56 NB500964:249:HHLFNBGX7:3:12605:20423:18895 339 6 52995834 1 75M = 52995719 -124 CTAGAACCTCCAAACAAGCTCTCAAGGTCCATTTGTAGGAGAACGTAGGGTAGTCAAGCTTCCAAGACTCCAGAC /EEEEAEAEAEEEEEEEEEEEEEEEEEEEEEEEAEEEEEEEEEEEEEEEEAEAEEEEEEEEEEEEEAEEEAAAAA AS:i:0 MD:Z:75 NM:i:0 NH:i:2 XN:i:0 XM:i:0 XO:i:0 XG:i:0 YS:i:-8 YT:Z:CP ZF:i:83
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
parents:
diff changeset
57 NB500964:249:HHLFNBGX7:3:21607:9911:11221 339 6 52995834 0 75M = 52995717 -126 CTAGAACCTCCAAACAAGCTCTCAAGGTCCATTTGTAGGAGAACGTAAGGTAGTCAAGCTTCCAAGACTCCAGAC EEEEEAEAEEEEEEEE</E/EEEE/E<A//EE6EEE/EEEEEEEEEEEEEEEE/A//EEEEEEEEEA/EEAAAAA AS:i:-5 MD:Z:47G27 NM:i:1 NH:i:2 XN:i:0 XM:i:1 XO:i:0 XG:i:0 YS:i:-8 YT:Z:CP ZF:i:83
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
parents:
diff changeset
58 NB500964:249:HHLFNBGX7:3:22611:13268:8039 339 6 52995848 1 75M = 52995709 -140 CAAGCTCTCAAGGTCCATTTGTAGGATAACGTAGGGTAGTCAAGCTTCCAAGACTCCAGACACATCCAAATGAGG AE/EE/<EE//AEA<AEEEEEEEE6E/EEAEEEEAE6EE/EE///EE//EE<EEEAEAAEAAE/EEAEEEAAA6A AS:i:-3 MD:Z:26G48 NM:i:1 NH:i:2 XN:i:0 XM:i:1 XO:i:0 XG:i:0 YS:i:-3 YT:Z:CP ZF:i:83
2cafa8420c04 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/bamutil/ commit c1945909ca200610f128577b68a82d9228905f3d-dirty"
jjohnson
parents:
diff changeset
59 NB500964:249:HHLFNBGX7:4:13509:13430:12762 355 6 73519451 1 66M366N9M = 73519983 241 ACCACGTTCACGCTCAGCTTTCAGTTTATCCAAGACCCAGGCATACTTGAAGGAGCCCTTTCCCATCTCAGCAGC AAAAAEEEEEEEEEEEEEEEEEEEEAEEEEEEEEAEEEEEEEEEEE/EE/EEEEEAEEAEEEAAEEEEEEEE<E< ZF:i:99 AS:i:0 MD:Z:75 NM:i:0 NH:i:3 XN:i:0 XM:i:0 ZS:i:0 XO:i:0 XG:i:0 YS:i:0 YT:Z:CP XS:A:-