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age author description
Mon, 13 Oct 2014 09:39:39 -0500 Jim Johnson Need all_fasta.loc for cummerbund default tip
Mon, 13 Oct 2014 09:29:20 -0500 Jim Johnson Use fasta_indexes tool_data_table
Mon, 13 Oct 2014 09:12:47 -0500 Jim Johnson Use same bias_correction cached param as devteam cuffdiff
Mon, 18 Nov 2013 16:43:15 -0600 Jim Johnson Add metadata to datatype: CuffDataDB
Fri, 15 Nov 2013 14:13:14 -0600 Jim Johnson Add tool_data_table_conf.xml.sample
Fri, 15 Nov 2013 13:42:58 -0600 Jim Johnson Add tool-data/all_fasta.loc.sample for cummerbund_wrapper.xml
Fri, 15 Nov 2013 13:39:14 -0600 Jim Johnson readCufflinks() parses feature file based on file extension: .gtf/.gff3 Also added gtfFile and genome input to cummerbund_wrapper.xml
Fri, 08 Nov 2013 14:54:01 -0600 Jim Johnson Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Mon, 04 Feb 2013 21:23:20 -0600 Jim Johnson Remove duplicate cds_diff_output option
Mon, 04 Feb 2013 19:50:25 -0500 jjohnson Uploaded
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