Mercurial > repos > jjohnson > cummerbund

annotate test-data/cuffcompare_out5.gtf @ 4:57c13cd32044

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Add tool-data/all_fasta.loc.sample for cummerbund_wrapper.xml
author Jim Johnson <jj@umn.edu>
date Fri, 15 Nov 2013 13:42:58 -0600
parents fdf01b3c1841
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1 chr1 Cufflinks exon 3204755 3204833 . - . gene_id "XLOC_000001"; transcript_id "TCONS_00000001"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.13.1"; nearest_ref "Xkr4"; class_code "c"; tss_id "TSS1";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2 chr1 Cufflinks exon 3111450 3111490 . . . gene_id "XLOC_000002"; transcript_id "TCONS_00000002"; exon_number "1"; oId "CUFF.1.1"; class_code "u"; tss_id "TSS2";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
3 chr1 Cufflinks exon 3111546 3111576 . . . gene_id "XLOC_000003"; transcript_id "TCONS_00000003"; exon_number "1"; oId "CUFF.3.1"; class_code "u"; tss_id "TSS3";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
4 chr1 Cufflinks exon 3174766 3174792 . . . gene_id "XLOC_000004"; transcript_id "TCONS_00000051"; exon_number "1"; oId "CUFF.1.1"; class_code "u"; tss_id "TSS4";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
5 chr1 Cufflinks exon 3187402 3187428 . . . gene_id "XLOC_000005"; transcript_id "TCONS_00000052"; exon_number "1"; oId "CUFF.3.1"; class_code "u"; tss_id "TSS5";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
6 chr1 Cufflinks exon 3188522 3188548 . . . gene_id "XLOC_000006"; transcript_id "TCONS_00000053"; exon_number "1"; oId "CUFF.5.1"; class_code "u"; tss_id "TSS6";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
7 chr1 Cufflinks exon 3189811 3190789 . . . gene_id "XLOC_000007"; transcript_id "TCONS_00000054"; exon_number "1"; oId "CUFF.11.1"; class_code "u"; tss_id "TSS7";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
8 chr1 Cufflinks exon 3190859 3191434 . . . gene_id "XLOC_000008"; transcript_id "TCONS_00000055"; exon_number "1"; oId "CUFF.7.1"; class_code "u"; tss_id "TSS10";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
9 chr1 Cufflinks exon 3191513 3192077 . . . gene_id "XLOC_000009"; transcript_id "TCONS_00000056"; exon_number "1"; oId "CUFF.9.1"; class_code "u"; tss_id "TSS11";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
10 chr1 Cufflinks exon 3192251 3192336 . . . gene_id "XLOC_000010"; transcript_id "TCONS_00000057"; exon_number "1"; oId "CUFF.13.1"; class_code "u"; tss_id "TSS13";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
11 chr1 Cufflinks exon 3192442 3192494 . . . gene_id "XLOC_000011"; transcript_id "TCONS_00000009"; exon_number "1"; oId "CUFF.39.1"; class_code "u"; tss_id "TSS14";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
12 chr1 Cufflinks exon 3192551 3192629 . . . gene_id "XLOC_000012"; transcript_id "TCONS_00000010"; exon_number "1"; oId "CUFF.41.1"; class_code "u"; tss_id "TSS15";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
13 chr1 Cufflinks exon 3192650 3192676 . . . gene_id "XLOC_000013"; transcript_id "TCONS_00000058"; exon_number "1"; oId "CUFF.15.1"; class_code "u"; tss_id "TSS16";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
14 chr1 Cufflinks exon 3192732 3192811 . . . gene_id "XLOC_000014"; transcript_id "TCONS_00000011"; exon_number "1"; oId "CUFF.43.1"; class_code "u"; tss_id "TSS17";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
15 chr1 Cufflinks exon 3192941 3193042 . . . gene_id "XLOC_000015"; transcript_id "TCONS_00000012"; exon_number "1"; oId "CUFF.45.1"; class_code "u"; tss_id "TSS18";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
16 chr1 Cufflinks exon 3194186 3194226 . . . gene_id "XLOC_000016"; transcript_id "TCONS_00000013"; exon_number "1"; oId "CUFF.47.1"; class_code "u"; tss_id "TSS19";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
17 chr1 Cufflinks exon 3194303 3194329 . . . gene_id "XLOC_000017"; transcript_id "TCONS_00000014"; exon_number "1"; oId "CUFF.49.1"; class_code "u"; tss_id "TSS20";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
18 chr1 Cufflinks exon 3194707 3194733 . . . gene_id "XLOC_000018"; transcript_id "TCONS_00000059"; exon_number "1"; oId "CUFF.17.1"; class_code "u"; tss_id "TSS21";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
19 chr1 Cufflinks exon 3195084 3195110 . . . gene_id "XLOC_000019"; transcript_id "TCONS_00000015"; exon_number "1"; oId "CUFF.51.1"; class_code "u"; tss_id "TSS22";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
20 chr1 Cufflinks exon 3195451 3195477 . . . gene_id "XLOC_000020"; transcript_id "TCONS_00000016"; exon_number "1"; oId "CUFF.53.1"; class_code "u"; tss_id "TSS23";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
21 chr1 Cufflinks exon 3197090 3197116 . . . gene_id "XLOC_000021"; transcript_id "TCONS_00000017"; exon_number "1"; oId "CUFF.55.1"; class_code "u"; tss_id "TSS24";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
22 chr1 Cufflinks exon 3197247 3197273 . . . gene_id "XLOC_000022"; transcript_id "TCONS_00000018"; exon_number "1"; oId "CUFF.57.1"; class_code "u"; tss_id "TSS25";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
23 chr1 Cufflinks exon 3197347 3197373 . . . gene_id "XLOC_000023"; transcript_id "TCONS_00000019"; exon_number "1"; oId "CUFF.59.1"; class_code "u"; tss_id "TSS26";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
24 chr1 Cufflinks exon 3197426 3197452 . . . gene_id "XLOC_000024"; transcript_id "TCONS_00000060"; exon_number "1"; oId "CUFF.19.1"; class_code "u"; tss_id "TSS27";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
25 chr1 Cufflinks exon 3200023 3200191 . . . gene_id "XLOC_000025"; transcript_id "TCONS_00000020"; exon_number "1"; oId "CUFF.7.1"; class_code "u"; tss_id "TSS28";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
26 chr1 Cufflinks exon 3200326 3200352 . . . gene_id "XLOC_000026"; transcript_id "TCONS_00000021"; exon_number "1"; oId "CUFF.5.1"; class_code "u"; tss_id "TSS29";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
27 chr1 Cufflinks exon 3200431 3200457 . . . gene_id "XLOC_000027"; transcript_id "TCONS_00000062"; exon_number "1"; oId "CUFF.21.1"; class_code "u"; tss_id "TSS30";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
28 chr1 Cufflinks exon 3201008 3201039 . . . gene_id "XLOC_000028"; transcript_id "TCONS_00000063"; exon_number "1"; oId "CUFF.26.1"; class_code "u"; tss_id "TSS31";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
29 chr1 Cufflinks exon 3201078 3201481 . . . gene_id "XLOC_000029"; transcript_id "TCONS_00000022"; exon_number "1"; oId "CUFF.9.1"; class_code "u"; tss_id "TSS32";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
30 chr1 Cufflinks exon 3201597 3201666 . . . gene_id "XLOC_000030"; transcript_id "TCONS_00000065"; exon_number "1"; oId "CUFF.29.1"; class_code "u"; tss_id "TSS33";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
31 chr1 Cufflinks exon 3201673 3201699 . . . gene_id "XLOC_000031"; transcript_id "TCONS_00000023"; exon_number "1"; oId "CUFF.11.1"; class_code "u"; tss_id "TSS34";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
32 chr1 Cufflinks exon 3201726 3201809 . . . gene_id "XLOC_000032"; transcript_id "TCONS_00000066"; exon_number "1"; oId "CUFF.31.1"; class_code "u"; tss_id "TSS35";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
33 chr1 Cufflinks exon 3211522 3211561 . . . gene_id "XLOC_000033"; transcript_id "TCONS_00000067"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.33.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS36";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
34 chr1 Cufflinks exon 3212214 3212292 . . . gene_id "XLOC_000034"; transcript_id "TCONS_00000024"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.15.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS37";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
35 chr1 Cufflinks exon 3212368 3212439 . . . gene_id "XLOC_000035"; transcript_id "TCONS_00000025"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.19.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS38";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
36 chr1 Cufflinks exon 3212718 3212801 . . . gene_id "XLOC_000036"; transcript_id "TCONS_00000068"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.35.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS39";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
37 chr1 Cufflinks exon 3213096 3213192 . . . gene_id "XLOC_000037"; transcript_id "TCONS_00000026"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.17.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS40";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
38 chr1 Cufflinks exon 3213119 3213242 . . . gene_id "XLOC_000037"; transcript_id "TCONS_00000069"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.37.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS40";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
39 chr1 Cufflinks exon 3240607 3240633 . . . gene_id "XLOC_000038"; transcript_id "TCONS_00000070"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.39.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS41";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
40 chr1 Cufflinks exon 3242480 3242512 . . . gene_id "XLOC_000039"; transcript_id "TCONS_00000071"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.41.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS42";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
41 chr1 Cufflinks exon 3242634 3242923 . . . gene_id "XLOC_000040"; transcript_id "TCONS_00000027"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.25.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS43";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
42 chr1 Cufflinks exon 3242925 3243005 . . . gene_id "XLOC_000041"; transcript_id "TCONS_00000072"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.43.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS44";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
43 chr1 Cufflinks exon 3243019 3243079 . . . gene_id "XLOC_000042"; transcript_id "TCONS_00000028"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.21.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS45";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
44 chr1 Cufflinks exon 3243109 3243154 . . . gene_id "XLOC_000043"; transcript_id "TCONS_00000073"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.45.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS46";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
45 chr1 Cufflinks exon 3243348 3243401 . . . gene_id "XLOC_000044"; transcript_id "TCONS_00000029"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.23.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS47";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
46 chr1 Cufflinks exon 3254080 3254106 . . . gene_id "XLOC_000045"; transcript_id "TCONS_00000074"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.47.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS48";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
47 chr1 Cufflinks exon 3256975 3257011 . . . gene_id "XLOC_000046"; transcript_id "TCONS_00000030"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.27.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS49";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
48 chr1 Cufflinks exon 3277156 3277182 . . . gene_id "XLOC_000047"; transcript_id "TCONS_00000075"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.49.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS50";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
49 chr1 Cufflinks exon 3277191 3277218 . . . gene_id "XLOC_000048"; transcript_id "TCONS_00000031"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.61.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS51";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
50 chr1 Cufflinks exon 3277914 3278390 . . . gene_id "XLOC_000049"; transcript_id "TCONS_00000076"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.51.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS52";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
51 chr1 Cufflinks exon 3280118 3280144 . . . gene_id "XLOC_000050"; transcript_id "TCONS_00000077"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.53.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS54";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
52 chr1 Cufflinks exon 3280499 3280525 . . . gene_id "XLOC_000051"; transcript_id "TCONS_00000078"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.55.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS55";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
53 chr1 Cufflinks exon 3280687 3280741 . . . gene_id "XLOC_000052"; transcript_id "TCONS_00000033"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.65.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS56";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
54 chr1 Cufflinks exon 3282505 3282531 . . . gene_id "XLOC_000053"; transcript_id "TCONS_00000079"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.57.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS57";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
55 chr1 Cufflinks exon 3282651 3282677 . . . gene_id "XLOC_000054"; transcript_id "TCONS_00000080"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.59.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS58";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
56 chr1 Cufflinks exon 3282761 3282832 . . . gene_id "XLOC_000055"; transcript_id "TCONS_00000081"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.61.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS59";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
57 chr1 Cufflinks exon 3284967 3284993 . . . gene_id "XLOC_000056"; transcript_id "TCONS_00000082"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.63.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS60";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
58 chr1 Cufflinks exon 3290489 3290553 . . . gene_id "XLOC_000057"; transcript_id "TCONS_00000034"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.67.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS61";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
59 chr1 Cufflinks exon 3290799 3290859 . . . gene_id "XLOC_000058"; transcript_id "TCONS_00000083"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.65.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS62";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
60 chr1 Cufflinks exon 3290920 3291273 . . . gene_id "XLOC_000059"; transcript_id "TCONS_00000084"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.69.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS63";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
61 chr1 Cufflinks exon 3299444 3299640 . . . gene_id "XLOC_000060"; transcript_id "TCONS_00000085"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.67.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS65";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
62 chr1 Cufflinks exon 3299610 3299664 . . . gene_id "XLOC_000060"; transcript_id "TCONS_00000037"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.73.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS66";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
63 chr1 Cufflinks exon 3299692 3299733 . . . gene_id "XLOC_000061"; transcript_id "TCONS_00000086"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.71.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS67";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
64 chr1 Cufflinks exon 3300052 3300078 . . . gene_id "XLOC_000062"; transcript_id "TCONS_00000038"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.75.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS68";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
65 chr1 Cufflinks exon 3307749 3307775 . . . gene_id "XLOC_000063"; transcript_id "TCONS_00000087"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.73.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS69";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
66 chr1 Cufflinks exon 3318621 3318647 . . . gene_id "XLOC_000064"; transcript_id "TCONS_00000088"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.75.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS70";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
67 chr1 Cufflinks exon 3319000 3319051 . . . gene_id "XLOC_000065"; transcript_id "TCONS_00000039"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.77.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS71";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
68 chr1 Cufflinks exon 3330528 3330554 . . . gene_id "XLOC_000066"; transcript_id "TCONS_00000089"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.77.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS72";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
69 chr1 Cufflinks exon 3351241 3351311 . . . gene_id "XLOC_000067"; transcript_id "TCONS_00000090"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.79.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS73";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
70 chr1 Cufflinks exon 3355888 3355914 . . . gene_id "XLOC_000068"; transcript_id "TCONS_00000040"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.79.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS74";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
71 chr1 Cufflinks exon 3355908 3356119 . . . gene_id "XLOC_000068"; transcript_id "TCONS_00000091"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.81.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS74";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
72 chr1 Cufflinks exon 3356181 3356225 . . . gene_id "XLOC_000069"; transcript_id "TCONS_00000092"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.83.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS75";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
73 chr1 Cufflinks exon 3363077 3363176 . . . gene_id "XLOC_000070"; transcript_id "TCONS_00000093"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.85.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS76";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
74 chr1 Cufflinks exon 3363215 3363278 . . . gene_id "XLOC_000071"; transcript_id "TCONS_00000041"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.81.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS77";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
75 chr1 Cufflinks exon 3363388 3363446 . . . gene_id "XLOC_000072"; transcript_id "TCONS_00000094"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.87.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS78";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
76 chr1 Cufflinks exon 3363754 3363849 . . . gene_id "XLOC_000073"; transcript_id "TCONS_00000042"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.83.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS79";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
77 chr1 Cufflinks exon 3364872 3364919 . . . gene_id "XLOC_000074"; transcript_id "TCONS_00000095"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.89.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS80";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
78 chr1 Cufflinks exon 3367136 3367162 . . . gene_id "XLOC_000075"; transcript_id "TCONS_00000043"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.85.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS81";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
79 chr1 Cufflinks exon 3367211 3367237 . . . gene_id "XLOC_000076"; transcript_id "TCONS_00000096"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.91.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS82";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
80 chr1 Cufflinks exon 3367334 3367382 . . . gene_id "XLOC_000077"; transcript_id "TCONS_00000044"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.87.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS83";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
81 chr1 Cufflinks exon 3369581 3369607 . . . gene_id "XLOC_000078"; transcript_id "TCONS_00000097"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.93.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS84";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
82 chr1 Cufflinks exon 3375002 3375028 . . . gene_id "XLOC_000079"; transcript_id "TCONS_00000098"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.95.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS85";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
83 chr1 Cufflinks exon 3377212 3377262 . . . gene_id "XLOC_000080"; transcript_id "TCONS_00000045"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.89.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS86";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
84 chr1 Cufflinks exon 3379889 3379915 . . . gene_id "XLOC_000081"; transcript_id "TCONS_00000099"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.97.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS87";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
85 chr1 Cufflinks exon 3386740 3386836 . . . gene_id "XLOC_000082"; transcript_id "TCONS_00000100"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.99.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS88";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
86 chr1 Cufflinks exon 3391326 3391352 . . . gene_id "XLOC_000083"; transcript_id "TCONS_00000046"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.91.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS89";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
87 chr1 Cufflinks exon 3435842 3435880 . . . gene_id "XLOC_000084"; transcript_id "TCONS_00000047"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.93.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS90";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
88 chr1 Cufflinks exon 3447762 3447788 . . . gene_id "XLOC_000085"; transcript_id "TCONS_00000048"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.95.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS91";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
89 chr1 Cufflinks exon 3450907 3450965 . . . gene_id "XLOC_000086"; transcript_id "TCONS_00000049"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.97.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS92";
fdf01b3c1841 Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Jim Johnson <jj@umn.edu>
parents:
diff changeset
90 chr1 Cufflinks exon 3451052 3451109 . . . gene_id "XLOC_000087"; transcript_id "TCONS_00000050"; exon_number "1"; gene_name "Xkr4"; oId "CUFF.99.1"; nearest_ref "Xkr4"; class_code "i"; tss_id "TSS93";