Mercurial > repos > jjohnson > cummerbund
comparison README @ 0:da7241f92ecf
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| author | jjohnson |
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| date | Mon, 04 Feb 2013 19:50:25 -0500 |
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| children | f109453ecfa2 |
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| -1:000000000000 | 0:da7241f92ecf |
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| 1 CummeRbund is an R package that is designed to aid and simplify the task of analyzing Cufflinks RNA-Seq output. | |
| 2 ( http://compbio.mit.edu/cummeRbund/ ) | |
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| 4 | |
| 5 Prerequisites for installing cumme=Rbund: | |
| 6 The linux package: libxml2-dev | |
| 7 In ubuntu: sudo apt-get install libxml2-dev | |
| 8 | |
| 9 R package: ggplot2 | |
| 10 install.packages("ggplot2",dependencies = TRUE) | |
| 11 | |
| 12 To install cummeRbund on your R server, follow the directions in: | |
| 13 ( http://www.bioconductor.org/packages/release/bioc/html/cummeRbund.html ) | |
| 14 source("http://bioconductor.org/biocLite.R") | |
| 15 biocLite("cummeRbund") | |
| 16 | |
| 17 This galaxy tool package includes a replacement variation of the cuffdiff wrapper that will generate an output that can be used directly in cummeRbund. | |
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