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comparison cuffdiff_wrapper.py @ 1:ebb9a992508d

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Remove duplicate cds_diff_output option
author Jim Johnson <jj@umn.edu>
date Mon, 04 Feb 2013 21:23:20 -0600
parents da7241f92ecf
children fdf01b3c1841
comparison
equal deleted inserted replaced
0:da7241f92ecf 1:ebb9a992508d
96 parser.add_option( "--tss_groups_read_group_tracking_output", dest="tss_groups_read_group_tracking_output", default=None ) 96 parser.add_option( "--tss_groups_read_group_tracking_output", dest="tss_groups_read_group_tracking_output", default=None )
97 parser.add_option( "--isoforms_exp_output", dest="isoforms_exp_output" ) 97 parser.add_option( "--isoforms_exp_output", dest="isoforms_exp_output" )
98 parser.add_option( "--genes_exp_output", dest="genes_exp_output" ) 98 parser.add_option( "--genes_exp_output", dest="genes_exp_output" )
99 parser.add_option( "--tss_groups_exp_output", dest="tss_groups_exp_output" ) 99 parser.add_option( "--tss_groups_exp_output", dest="tss_groups_exp_output" )
100 parser.add_option( "--cds_exp_fpkm_tracking_output", dest="cds_exp_fpkm_tracking_output" ) 100 parser.add_option( "--cds_exp_fpkm_tracking_output", dest="cds_exp_fpkm_tracking_output" )
101 parser.add_option( "--cds_diff_output", dest="cds_diff_output" )
102 parser.add_option( "--isoforms_count_tracking_output", dest="isoforms_count_tracking_output" ) 101 parser.add_option( "--isoforms_count_tracking_output", dest="isoforms_count_tracking_output" )
103 parser.add_option( "--genes_count_tracking_output", dest="genes_count_tracking_output" ) 102 parser.add_option( "--genes_count_tracking_output", dest="genes_count_tracking_output" )
104 parser.add_option( "--cds_count_tracking_output", dest="cds_count_tracking_output" ) 103 parser.add_option( "--cds_count_tracking_output", dest="cds_count_tracking_output" )
105 parser.add_option( "--tss_groups_count_tracking_output", dest="tss_groups_count_tracking_output" ) 104 parser.add_option( "--tss_groups_count_tracking_output", dest="tss_groups_count_tracking_output" )
106 parser.add_option( "--splicing_diff_output", dest="splicing_diff_output" ) 105 parser.add_option( "--splicing_diff_output", dest="splicing_diff_output" )