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diff cuffdata.py @ 7:b5562b9a55c7

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Use same bias_correction cached param as devteam cuffdiff
author Jim Johnson <jj@umn.edu>
date Mon, 13 Oct 2014 09:12:47 -0500
parents 137aab1d9ac1
children
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--- a/cuffdata.py	Mon Nov 18 16:43:15 2013 -0600
+++ b/cuffdata.py	Mon Oct 13 09:12:47 2014 -0500
@@ -135,8 +135,7 @@
             ## Create a tmpdir
             ## create an Rscript to write out info about the CuffData, e.g. samples replicates gene_ids
             ## define file names to use as sinks for each type of data
-            # tmp_dir = tempfile.mkdtemp()
-            tmp_dir = '/tmp/gx/cuffdb'
+            tmp_dir = tempfile.mkdtemp()
             if not os.path.isdir(tmp_dir):
                 os.makedirs(tmp_dir)
             rscript = tempfile.NamedTemporaryFile( dir=tmp_dir,suffix='.r' ).name