diff cummerbund_wrapper.py @ 2:fdf01b3c1841

Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
author Jim Johnson <jj@umn.edu>
date Fri, 08 Nov 2013 14:54:01 -0600
parents da7241f92ecf
children
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--- a/cummerbund_wrapper.py	Mon Feb 04 21:23:20 2013 -0600
+++ b/cummerbund_wrapper.py	Fri Nov 08 14:54:01 2013 -0600
@@ -13,8 +13,10 @@
 def html_report_from_directory( html_out, dir ):
     html_out.write( '<html>\n<head>\n<title>Galaxy - cummeRbund Output</title>\n</head>\n<body>\n<p/>\n<ul>\n' )
     for fname in sorted( os.listdir( dir ) ):
-        # html_out.write(  '<li><a href="%s">%s</a></li>\n' % ( fname, fname ) )
-        html_out.write(  '<li><a href="%s"><img src="%s" alt="" height="80" width="80">%s</a></li>\n' % ( fname, fname , fname ) )
+        if fname.endswith(".txt"):
+            html_out.write(  '<li><a href="%s">%s</a></li>\n' % ( fname, fname ) )
+        else:
+            html_out.write(  '<li><a href="%s"><img src="%s" alt="" height="80" width="80">%s</a></li>\n' % ( fname, fname , fname ) )
     html_out.write( '</ul>\n</body>\n</html>\n' )
 
 def __main__():