<tool id="cuffdiff_mds_plot" name="Cuffdiff MDS Plot" version="1.0">
  <description>MultiDimensional Scaling (MDS) plot from cuffdiff read_group_tracking</description>
  <command interpreter="perl">
    cuffdiff_mds_plot.pl $input data.tmp $plot
  </command>
  <inputs>
    <param format="tabular" name="input" type="data" label="A cuffdiff2 tracking file"
           help="any of the *.read_group_tracking files produced by cuffdiff2"/>
  </inputs>
  <outputs>
    <data format="png" name="plot" label="${tool.name} on ${on_string}"/>
  </outputs>
  <tests>
    <test>
    </test>
  </tests>
  <help>
    Generates a multidimensional scaling (MDS) plot of a read_group_tracking output file from cuffdiff ver2.
  </help>
</tool>