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Need all_fasta.loc for cummerbund default tip
2014-10-13, by Jim Johnson
Use fasta_indexes tool_data_table
2014-10-13, by Jim Johnson
Use same bias_correction cached param as devteam cuffdiff
2014-10-13, by Jim Johnson
Add metadata to datatype: CuffDataDB
2013-11-18, by Jim Johnson
Add tool_data_table_conf.xml.sample
2013-11-15, by Jim Johnson
Add tool-data/all_fasta.loc.sample for cummerbund_wrapper.xml
2013-11-15, by Jim Johnson
readCufflinks() parses feature file based on file extension: .gtf/.gff3 Also added gtfFile and genome input to cummerbund_wrapper.xml
2013-11-15, by Jim Johnson
Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
2013-11-08, by Jim Johnson
Remove duplicate cds_diff_output option
2013-02-05, by Jim Johnson
Uploaded
2013-02-05, by jjohnson

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