cummerbund: revision graph

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readCufflinks() parses feature file based on file extension: .gtf/.gff3 Also added gtfFile and genome input to cummerbund_wrapper.xml
Fri, 15 Nov 2013 13:39:14 -0600, by Jim Johnson
Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
Fri, 08 Nov 2013 14:54:01 -0600, by Jim Johnson

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