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2013-11-15 Jim Johnson Add tool_data_table_conf.xml.sample
2013-11-15 Jim Johnson Add tool-data/all_fasta.loc.sample for cummerbund_wrapper.xml
2013-11-15 Jim Johnson readCufflinks() parses feature file based on file extension: .gtf/.gff3 Also added gtfFile and genome input to cummerbund_wrapper.xml
2013-11-08 Jim Johnson Update to new cuffdiff wrapper, add cuffdb_info.txt to cummerbund html output
2013-02-05 Jim Johnson Remove duplicate cds_diff_output option
2013-02-05 jjohnson Uploaded
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