Mercurial > repos > jjohnson > encyclopedia_fasta_to_prosit_csv

comparison macros.xml @ 4:91343296dbff draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit 96a023cccea27c30ff61caf271a3c79b92db1873"
author jjohnson
date Tue, 07 Jul 2020 11:57:34 -0400
parents b9a2af09b828
children aaca2f8930a2
comparison
equal deleted inserted replaced
3:b9a2af09b828 4:91343296dbff
29 #else 29 #else
30 #return $input1.name 30 #return $input1.name
31 #end if 31 #end if
32 #end def 32 #end def
33 #def clean($name1) 33 #def clean($name1)
34 ## #set $name_clean = $re.sub('[^\w\-_\.]', '_', $re.sub('(?i[.](fa|fasta|imzml|mzml)$)','', $re.sub('.*/','', $name1.rstrip('.gz')))) 34 #set $name_clean = $re.sub('[^\w\-_]', '_', $re.sub('(?i)[.](fa|fasta|imzml|mzml)$','', $re.sub('.*/','', $name1.rstrip('.gz'))))
35 ## #set $name_clean = $re.sub('[^\w\-_\.]', '_', $re.sub('.*/','', $name1.rstrip('.gz')))
36 #set $name_clean = $re.sub('[^\w\-_\.]', '_', $re.sub('(?i)[.](fa|fasta|imzml|mzml)$','', $re.sub('.*/','', $name1.rstrip('.gz'))))
37 #return $name_clean 35 #return $name_clean
38 #end def 36 #end def
39 #def ln_name($ds) 37 #def ln_name($ds)
40 #set $ext = '' 38 #set $ext = ''
41 #if $ds.is_of_type('mzml') 39 #if $ds.is_of_type('mzml') or $ds.is_of_type('imzml')
42 #set $ext = ".mzML" 40 #set $ext = ".mzML"
43 #else if $ds.is_of_type('elib') 41 #else if $ds.is_of_type('elib')
44 #set $ext = ".elib" 42 #set $ext = ".elib"
45 #else if $ds.is_of_type('dlib') 43 #else if $ds.is_of_type('dlib')
46 #set $ext = ".dlib" 44 #set $ext = ".dlib"