Mercurial > repos > jjohnson > encyclopedia_fasta_to_prosit_csv
diff macros.xml @ 4:91343296dbff draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit 96a023cccea27c30ff61caf271a3c79b92db1873"
| author | jjohnson |
|---|---|
| date | Tue, 07 Jul 2020 11:57:34 -0400 |
| parents | b9a2af09b828 |
| children | aaca2f8930a2 |
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--- a/macros.xml Thu Jul 02 11:14:11 2020 -0400 +++ b/macros.xml Tue Jul 07 11:57:34 2020 -0400 @@ -31,14 +31,12 @@ #end if #end def #def clean($name1) - ## #set $name_clean = $re.sub('[^\w\-_\.]', '_', $re.sub('(?i[.](fa|fasta|imzml|mzml)$)','', $re.sub('.*/','', $name1.rstrip('.gz')))) - ## #set $name_clean = $re.sub('[^\w\-_\.]', '_', $re.sub('.*/','', $name1.rstrip('.gz'))) - #set $name_clean = $re.sub('[^\w\-_\.]', '_', $re.sub('(?i)[.](fa|fasta|imzml|mzml)$','', $re.sub('.*/','', $name1.rstrip('.gz')))) + #set $name_clean = $re.sub('[^\w\-_]', '_', $re.sub('(?i)[.](fa|fasta|imzml|mzml)$','', $re.sub('.*/','', $name1.rstrip('.gz')))) #return $name_clean #end def #def ln_name($ds) #set $ext = '' - #if $ds.is_of_type('mzml') + #if $ds.is_of_type('mzml') or $ds.is_of_type('imzml') #set $ext = ".mzML" #else if $ds.is_of_type('elib') #set $ext = ".elib"