Mercurial > repos > jjohnson > encyclopedia_walnut
comparison encyclopedia_walnut.xml @ 7:7556b19daa48 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit dd611a143e4e003a5fb085cdf93ae477cc5ea0b1"
author | jjohnson |
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date | Wed, 26 Aug 2020 14:42:51 -0400 |
parents | 0172dfa08216 |
children |
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6:0172dfa08216 | 7:7556b19daa48 |
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7 <command detect_errors="aggressive"><![CDATA[ | 7 <command detect_errors="aggressive"><![CDATA[ |
8 @CMD_IMPORTS@ | 8 @CMD_IMPORTS@ |
9 @LINK_SCAN_INPUT@ | 9 @LINK_SCAN_INPUT@ |
10 @LINK_FASTA_INPUT@ | 10 @LINK_FASTA_INPUT@ |
11 @LINK_TARGET_FASTA@ | 11 @LINK_TARGET_FASTA@ |
12 EncyclopeDIA -Djava.awt.headless=true -Xmx12g -walnut | 12 EncyclopeDIA -Djava.awt.headless=true -Xmx\$[ \${GALAXY_MEMORY_MB:-20480} / 1024 ]g -walnut |
13 @SCAN_INPUT@ | 13 @SCAN_INPUT@ |
14 @FASTA_INPUT@ | 14 @FASTA_INPUT@ |
15 @TARGET_FASTA@ | 15 @TARGET_FASTA@ |
16 @COMMON_OPTIONS@ | 16 @COMMON_OPTIONS@ |
17 @MASS_LIBRARY_TOLERANCE@ | 17 @MASS_LIBRARY_TOLERANCE@ |
63 </outputs> | 63 </outputs> |
64 <tests> | 64 <tests> |
65 <test> | 65 <test> |
66 <param name="scan_input" ftype="mzml" value="BCS_hela_narrow_3_1.mzML"/> | 66 <param name="scan_input" ftype="mzml" value="BCS_hela_narrow_3_1.mzML"/> |
67 <param name="fasta" ftype="fasta" value="uniprot_tiny_human.fasta"/> | 67 <param name="fasta" ftype="fasta" value="uniprot_tiny_human.fasta"/> |
68 <param name="select_outputs" values="log,features,pecan"/> | 68 <param name="select_outputs" value="log,features,pecan"/> |
69 <output name="features" ftype="tabular"> | 69 <output name="features" ftype="tabular"> |
70 <assert_contents> | 70 <assert_contents> |
71 <has_text text="LHYNEGLNIK"/> | 71 <has_text text="LHYNEGLNIK"/> |
72 </assert_contents> | 72 </assert_contents> |
73 </output> | 73 </output> |