Mercurial > repos > jjohnson > encyclopedia_walnut

changeset 7:7556b19daa48 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit dd611a143e4e003a5fb085cdf93ae477cc5ea0b1"
author jjohnson
date Wed, 26 Aug 2020 14:42:51 -0400
parents 0172dfa08216
children c0af2ce65e32
files encyclopedia_walnut.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/encyclopedia_walnut.xml	Fri Aug 21 16:13:00 2020 -0400
+++ b/encyclopedia_walnut.xml	Wed Aug 26 14:42:51 2020 -0400
@@ -9,7 +9,7 @@
         @LINK_SCAN_INPUT@
         @LINK_FASTA_INPUT@
         @LINK_TARGET_FASTA@
-        EncyclopeDIA -Djava.awt.headless=true -Xmx12g -walnut
+        EncyclopeDIA -Djava.awt.headless=true -Xmx\$[ \${GALAXY_MEMORY_MB:-20480} / 1024 ]g -walnut
         @SCAN_INPUT@
         @FASTA_INPUT@
         @TARGET_FASTA@
@@ -65,7 +65,7 @@
         <test>
             <param name="scan_input" ftype="mzml" value="BCS_hela_narrow_3_1.mzML"/>
             <param name="fasta" ftype="fasta" value="uniprot_tiny_human.fasta"/>
-            <param name="select_outputs" values="log,features,pecan"/>
+            <param name="select_outputs" value="log,features,pecan"/>
             <output name="features" ftype="tabular">
                 <assert_contents>
                     <has_text text="LHYNEGLNIK"/>