Mercurial > repos > jjohnson > gmap
comparison gmap/gmap_indices.loc.sample @ 4:f49f5a460c74
GSNAP - add and refine param options for gmap v 2011-10-16
| author | Jim Johnson <jj@umn.edu> |
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| date | Tue, 08 Nov 2011 13:02:32 -0600 |
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| children |
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| 3:72ab00e732c3 | 4:f49f5a460c74 |
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| 1 #This is a sample file distributed with Galaxy that enables tools | |
| 2 #to use a directory of GMAPDB indexed sequences data files. You will need | |
| 3 #to create these data files using gmap_build and then create a gmap_indices.loc file | |
| 4 #similar to this one (store it in this directory) that points to | |
| 5 #the directories in which those files are stored. The gmap_indices.loc | |
| 6 #file has this format (white space characters are TAB characters): | |
| 7 # | |
| 8 #<unique_build_id> <dbkey> <display_name> <kmers> <map,map> <snp,snp> <file_base_path> | |
| 9 #hg18 hg18 hg18 (cmet atoi) 12,13,14,15 splicesites,introns snps /depot/data2/galaxy/gmap/hg18 | |
| 10 #hg19 hg19 hg19 (cmet atoi) 12,13,14,15 splicesites,introns,snps snps,dbsnp /depot/data2/galaxy/gmap/hg19 |