Mercurial > repos > jjohnson > gmap
view gmap/gmap_indices.loc.sample @ 4:f49f5a460c74
GSNAP - add and refine param options for gmap v 2011-10-16
author | Jim Johnson <jj@umn.edu> |
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date | Tue, 08 Nov 2011 13:02:32 -0600 |
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#This is a sample file distributed with Galaxy that enables tools #to use a directory of GMAPDB indexed sequences data files. You will need #to create these data files using gmap_build and then create a gmap_indices.loc file #similar to this one (store it in this directory) that points to #the directories in which those files are stored. The gmap_indices.loc #file has this format (white space characters are TAB characters): # #<unique_build_id> <dbkey> <display_name> <kmers> <map,map> <snp,snp> <file_base_path> #hg18 hg18 hg18 (cmet atoi) 12,13,14,15 splicesites,introns snps /depot/data2/galaxy/gmap/hg18 #hg19 hg19 hg19 (cmet atoi) 12,13,14,15 splicesites,introns,snps snps,dbsnp /depot/data2/galaxy/gmap/hg19