mothur_toolsuite: revision graph

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Fixed reference to legacy blast repository in tool_dependencies.xml. Updated README with author information. default tip
2014-11-10, by galaxyuser
Updated tools to use Mothur 1.33. Added some misc. fixes and updates (blast repository, tool fixes)
2014-10-31, by certain cat
Updated tool_dependencies.xml to build mothur package on Linux (may break other OSes).
2014-09-22, by pjbriggs
mothur_wrapper.py - convert_value needs to return a String
2013-09-11, by Jim Johnson
Fixes courtesy of Peter Briggs:
2013-09-04, by Jim Johnson
Patches courtesy of Peter Briggs, Bioinformatics Core Facility University of Manchester
2013-07-30, by Jim Johnson
metagenomics.py - require ref.taxonomy sniff to find at least 1 multi-level tax assignment with semicolon separators
2013-05-30, by Jim Johnson
Fixes for metagenomics.py datatypes tahnks to Peter Briggs
2013-05-28, by Jim Johnson
mothur_wrapper.py - remove type restrictions for params - was failing for chimera.slayer
2013-02-20, by Jim Johnson
Update to mothur version 1.27 and add tool_dependencies.xml to automatically install mothur
2012-12-04, by Jim Johnson
Updates for Mothur version 1.25.0 (includes changes to datatypes metagenomics.py and uses more efficient means for labels and groups options)
2012-05-16, by Jim Johnson
Change metagenomics datatypes to include labels and groups metadata. change Mothur tool configs to get label and group select options from a data_meta filter rather than using the options from_dataset attribute. This grealty decreases memory demand for the galaxy server.
2012-05-16, by Jim Johnson
Mothur - updates for Mothur version 1.24
2012-03-28, by Jim Johnson
Mothur - eliminate warning message in mothur_count_groups
2012-01-19, by Jim Johnson
Mothur - html escape amperand in calculator option label
2012-01-19, by Jim Johnson
Changed np_shannon calcultor to npshannon and posted bug to mothur.org
2012-01-17, by Jim Johnson
Remove obsolete suite_config.xml
2012-01-17, by Jim Johnson
Move calc options in individual tools and remove tool-data/mothur_calculators.loc
2012-01-17, by Jim Johnson
Mothur - update for Mothur version 1.23.0
2012-01-17, by Jim Johnson
Modifications for ToolShed proprietary data types
2012-01-17, by Jim Johnson
Mothur - fix set_meta for SffFlow in datatypes/metagenomics.py
2011-12-09, by Jim Johnson
Mothur - updated for Mothur version 1.22.0
2011-11-08, by Jim Johnson
Mothur - make.fastq fix command name and change_format on output fastq according to qual input, fastq.info outputs qual454
2011-10-05, by Jim Johnson
Change default processor counts to 8, mothur_wrapper.py can overide processors allocated with ENVIRONMENT variable MOTHUR_MAX_PROCESSORS
2011-10-05, by Jim Johnson
Mothur galaxy tool updates for Mothur version 1.21.0, fix help section warnings
2011-08-09, by Jim Johnson
Change make.shared param name from unique to groups
2011-07-14, by Jim Johnson
Default value for skipgap params should be true
2011-07-08, by Jim Johnson
Add name param to classify.otu
2011-07-08, by Jim Johnson
trim.seqs name parameter needs to be optional
2011-07-05, by Jim Johnson
Support Mothur v1.20
2011-06-27, by Jim Johnson
Allow for output file ext to be either .chimera or .chimeras
2011-06-27, by Jim Johnson
Add missing qual params to trim.seqs
2011-06-09, by jj
set output formats to match input formats
2011-06-08, by jjohnson
workflow cleanup_param_values recurses through paramnames whenever they start with a paramname_, so change input to input_fasta
2011-06-08, by jj
Migrated tool version 1.19.0 from old tool shed archive to new tool shed repository
2011-06-07, by jjohnson
Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
2011-06-07, by jjohnson
Migrated tool version 1.15.1 from old tool shed archive to new tool shed repository
2011-06-07, by jjohnson

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