Mercurial > repos > jjohnson > mothur_toolsuite

log

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
less more | rev 36: (0) -24 tip
age author description
2014-11-10 galaxyuser Fixed reference to legacy blast repository in tool_dependencies.xml. Updated README with author information. default tip
2014-10-31 certain cat Updated tools to use Mothur 1.33. Added some misc. fixes and updates (blast repository, tool fixes)
2014-09-22 pjbriggs Updated tool_dependencies.xml to build mothur package on Linux (may break other OSes).
2013-09-11 Jim Johnson mothur_wrapper.py - convert_value needs to return a String
2013-09-04 Jim Johnson Fixes courtesy of Peter Briggs:
2013-07-30 Jim Johnson Patches courtesy of Peter Briggs, Bioinformatics Core Facility University of Manchester
2013-05-30 Jim Johnson metagenomics.py - require ref.taxonomy sniff to find at least 1 multi-level tax assignment with semicolon separators
2013-05-28 Jim Johnson Fixes for metagenomics.py datatypes tahnks to Peter Briggs
2013-02-20 Jim Johnson mothur_wrapper.py - remove type restrictions for params - was failing for chimera.slayer
2012-12-04 Jim Johnson Update to mothur version 1.27 and add tool_dependencies.xml to automatically install mothur
2012-05-16 Jim Johnson Updates for Mothur version 1.25.0 (includes changes to datatypes metagenomics.py and uses more efficient means for labels and groups options)
2012-05-16 Jim Johnson Change metagenomics datatypes to include labels and groups metadata. change Mothur tool configs to get label and group select options from a data_meta filter rather than using the options from_dataset attribute. This grealty decreases memory demand for the galaxy server.
2012-03-28 Jim Johnson Mothur - updates for Mothur version 1.24
2012-01-19 Jim Johnson Mothur - eliminate warning message in mothur_count_groups
2012-01-19 Jim Johnson Mothur - html escape amperand in calculator option label
2012-01-17 Jim Johnson Changed np_shannon calcultor to npshannon and posted bug to mothur.org
2012-01-17 Jim Johnson Remove obsolete suite_config.xml
2012-01-17 Jim Johnson Move calc options in individual tools and remove tool-data/mothur_calculators.loc
2012-01-17 Jim Johnson Mothur - update for Mothur version 1.23.0
2012-01-17 Jim Johnson Modifications for ToolShed proprietary data types
2011-12-09 Jim Johnson Mothur - fix set_meta for SffFlow in datatypes/metagenomics.py
2011-11-08 Jim Johnson Mothur - updated for Mothur version 1.22.0
2011-10-05 Jim Johnson Mothur - make.fastq fix command name and change_format on output fastq according to qual input, fastq.info outputs qual454
2011-10-05 Jim Johnson Change default processor counts to 8, mothur_wrapper.py can overide processors allocated with ENVIRONMENT variable MOTHUR_MAX_PROCESSORS
less more | rev 36: (0) -24 tip