| 2014-11-10 |
galaxyuser |
Fixed reference to legacy blast repository in tool_dependencies.xml. Updated README with author information.
default tip
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| 2014-10-31 |
certain cat |
Updated tools to use Mothur 1.33. Added some misc. fixes and updates (blast repository, tool fixes)
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| 2014-09-22 |
pjbriggs |
Updated tool_dependencies.xml to build mothur package on Linux (may break other OSes).
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| 2013-09-11 |
Jim Johnson |
mothur_wrapper.py - convert_value needs to return a String
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| 2013-09-04 |
Jim Johnson |
Fixes courtesy of Peter Briggs:
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| 2013-07-30 |
Jim Johnson |
Patches courtesy of Peter Briggs, Bioinformatics Core Facility University of Manchester
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| 2013-05-30 |
Jim Johnson |
metagenomics.py - require ref.taxonomy sniff to find at least 1 multi-level tax assignment with semicolon separators
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| 2013-05-28 |
Jim Johnson |
Fixes for metagenomics.py datatypes tahnks to Peter Briggs
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| 2013-02-20 |
Jim Johnson |
mothur_wrapper.py - remove type restrictions for params - was failing for chimera.slayer
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| 2012-12-04 |
Jim Johnson |
Update to mothur version 1.27 and add tool_dependencies.xml to automatically install mothur
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| 2012-05-16 |
Jim Johnson |
Updates for Mothur version 1.25.0 (includes changes to datatypes metagenomics.py and uses more efficient means for labels and groups options)
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| 2012-05-16 |
Jim Johnson |
Change metagenomics datatypes to include labels and groups metadata. change Mothur tool configs to get label and group select options from a data_meta filter rather than using the options from_dataset attribute. This grealty decreases memory demand for the galaxy server.
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| 2012-03-28 |
Jim Johnson |
Mothur - updates for Mothur version 1.24
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| 2012-01-19 |
Jim Johnson |
Mothur - eliminate warning message in mothur_count_groups
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| 2012-01-19 |
Jim Johnson |
Mothur - html escape amperand in calculator option label
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| 2012-01-17 |
Jim Johnson |
Changed np_shannon calcultor to npshannon and posted bug to mothur.org
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| 2012-01-17 |
Jim Johnson |
Remove obsolete suite_config.xml
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| 2012-01-17 |
Jim Johnson |
Move calc options in individual tools and remove tool-data/mothur_calculators.loc
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| 2012-01-17 |
Jim Johnson |
Mothur - update for Mothur version 1.23.0
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| 2012-01-17 |
Jim Johnson |
Modifications for ToolShed proprietary data types
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| 2011-12-09 |
Jim Johnson |
Mothur - fix set_meta for SffFlow in datatypes/metagenomics.py
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| 2011-11-08 |
Jim Johnson |
Mothur - updated for Mothur version 1.22.0
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| 2011-10-05 |
Jim Johnson |
Mothur - make.fastq fix command name and change_format on output fastq according to qual input, fastq.info outputs qual454
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| 2011-10-05 |
Jim Johnson |
Change default processor counts to 8, mothur_wrapper.py can overide processors allocated with ENVIRONMENT variable MOTHUR_MAX_PROCESSORS
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| 2011-08-09 |
Jim Johnson |
Mothur galaxy tool updates for Mothur version 1.21.0, fix help section warnings
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| 2011-07-14 |
Jim Johnson |
Change make.shared param name from unique to groups
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| 2011-07-08 |
Jim Johnson |
Default value for skipgap params should be true
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| 2011-07-08 |
Jim Johnson |
Add name param to classify.otu
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| 2011-07-05 |
Jim Johnson |
trim.seqs name parameter needs to be optional
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| 2011-06-27 |
Jim Johnson |
Support Mothur v1.20
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| 2011-06-27 |
Jim Johnson |
Allow for output file ext to be either .chimera or .chimeras
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| 2011-06-09 |
jj |
Add missing qual params to trim.seqs
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| 2011-06-08 |
jjohnson |
set output formats to match input formats
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| 2011-06-08 |
jj |
workflow cleanup_param_values recurses through paramnames whenever they start with a paramname_, so change input to input_fasta
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| 2011-06-07 |
jjohnson |
Migrated tool version 1.19.0 from old tool shed archive to new tool shed repository
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| 2011-06-07 |
jjohnson |
Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
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| 2011-06-07 |
jjohnson |
Migrated tool version 1.15.1 from old tool shed archive to new tool shed repository
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