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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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e5c3175506b7 Initial tool configs for qiime, most need work.
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1 <tool id="make_qiime_py_file" name="make_qiime_py_file" version="1.2.0">
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2 <description>Create python file</description>
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3 <requirements>
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4 <requirement type="binary">make_qiime_py_file.py</requirement>
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5 </requirements>
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6 <command interpreter="python">
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7 qiime_wrapper.py
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8 --galaxy_tmpdir='$__new_file_path__'
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9 make_qiime_py_file.py
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10 --output_fp=$output_fp
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11 $script
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12 $test
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13 --author_name=$author_name
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14 --author_email=$author_email
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15 --copyright=$copyright
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16 </command>
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17 <inputs>
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18 <param name="script" type="boolean" truevalue="--script" falsevalue="" checked="false" label="script"
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19 help="Pass if creating a script to include option parsing framework [default:False]."/>
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20 <param name="test" type="boolean" truevalue="--test" falsevalue="" checked="false" label="test"
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21 help="Pass if creating a unit test file to include relevant information [default:False]."/>
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22 <param name="author_name" type="text" value="AUTHOR_NAME" label="author_name"
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23 help="The script author's (probably you) name to be included the header variables. This will typically need to be enclosed in quotes to handle spaces. [default:AUTHOR_NAME]"/>
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24 <param name="author_email" type="text" value="AUTHOR_EMAIL" label="author_email"
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25 help="The script author's (probably you) e-mail address to be included the header variables. [default:AUTHOR_EMAIL]"/>
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26 <param name="copyright" type="text" value="Copyright 2010, The QIIME project" label="copyright"
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27 help="The copyright information to be included in the header variables. [default:Copyright 2010, The QIIME project]"/>
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28 </inputs>
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29 <outputs>
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30 <data format="txt" name="output_fp"/>
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31 </outputs>
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32 <tests>
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33 </tests>
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34 <help>
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35
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36 </help>
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37 </tool>
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