Mercurial > repos > jjohnson > qiime
diff make_qiime_py_file.xml @ 0:e5c3175506b7 default tip
Initial tool configs for qiime, most need work.
author | Jim Johnson <jj@umn.edu> |
---|---|
date | Sun, 17 Jul 2011 10:30:11 -0500 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/make_qiime_py_file.xml Sun Jul 17 10:30:11 2011 -0500 @@ -0,0 +1,38 @@ +<tool id="make_qiime_py_file" name="make_qiime_py_file" version="1.2.0"> + <description>Create python file</description> + <requirements> + <requirement type="binary">make_qiime_py_file.py</requirement> + </requirements> + <command interpreter="python"> + qiime_wrapper.py + --galaxy_tmpdir='$__new_file_path__' + make_qiime_py_file.py + --output_fp=$output_fp + $script + $test + --author_name=$author_name + --author_email=$author_email + --copyright=$copyright + </command> + <inputs> + <param name="script" type="boolean" truevalue="--script" falsevalue="" checked="false" label="script" + help="Pass if creating a script to include option parsing framework [default:False]."/> + <param name="test" type="boolean" truevalue="--test" falsevalue="" checked="false" label="test" + help="Pass if creating a unit test file to include relevant information [default:False]."/> + <param name="author_name" type="text" value="AUTHOR_NAME" label="author_name" + help="The script author's (probably you) name to be included the header variables. This will typically need to be enclosed in quotes to handle spaces. [default:AUTHOR_NAME]"/> + <param name="author_email" type="text" value="AUTHOR_EMAIL" label="author_email" + help="The script author's (probably you) e-mail address to be included the header variables. [default:AUTHOR_EMAIL]"/> + <param name="copyright" type="text" value="Copyright 2010, The QIIME project" label="copyright" + help="The copyright information to be included in the header variables. [default:Copyright 2010, The QIIME project]"/> + </inputs> + <outputs> + <data format="txt" name="output_fp"/> + </outputs> + <tests> + </tests> + <help> + + </help> +</tool> +