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comparison convert_unifrac_sample_mapping_to_otu_table.xml @ 0:e5c3175506b7 default tip

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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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1 <tool id="convert_unifrac_sample_mapping_to_otu_table" name="convert_unifrac_sample_mapping_to_otu_table" version="1.2.0">
2 <description>Convert a UniFrac sample mapping file to an OTU table</description>
3 <requirements>
4 <requirement type="binary">convert_unifrac_sample_mapping_to_otu_table.py</requirement>
5 </requirements>
6 <command interpreter="python">
7 qiime_wrapper.py
8 --galaxy_tmpdir='$__new_file_path__'
9 convert_unifrac_sample_mapping_to_otu_table.py
10 --sample_mapping_fp=$sample_mapping_fp
11 --output_fp=$output_fp
12 </command>
13 <inputs>
14 <param name="sample_mapping_fp" type="data" format="tabular" label="sample_mapping_fp"
15 help="path to the sample mapping file [REQUIRED]"/>
16 </inputs>
17 <outputs>
18 <data format="txt" name="output_fp"/>
19 </outputs>
20 <tests>
21 </tests>
22 <help>
23
24 </help>
25 </tool>
26