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comparison convert_otu_table_to_unifrac_sample_mapping.xml @ 0:e5c3175506b7 default tip

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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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1 <tool id="convert_otu_table_to_unifrac_sample_mapping" name="convert_otu_table_to_unifrac_sample_mapping" version="1.2.0">
2 <description>Convert a QIIME OTU table to a UniFrac sample mapping file</description>
3 <requirements>
4 <requirement type="binary">convert_otu_table_to_unifrac_sample_mapping.py</requirement>
5 </requirements>
6 <command interpreter="python">
7 qiime_wrapper.py
8 --galaxy_tmpdir='$__new_file_path__'
9 convert_otu_table_to_unifrac_sample_mapping.py
10 --otu_table_fp=$otu_table_fp
11 --output_fp=$output_fp
12 </command>
13 <inputs>
14 <param name="otu_table_fp" type="data" format="txt" label="otu_table_fp"
15 help="path to the otu table [REQUIRED]"/>
16 </inputs>
17 <outputs>
18 <data format="txt" name="output_fp"/>
19 </outputs>
20 <tests>
21 </tests>
22 <help>
23
24 </help>
25 </tool>
26