Mercurial > repos > jjohnson > qiime
comparison merge_otu_maps.xml @ 0:e5c3175506b7 default tip
Initial tool configs for qiime, most need work.
| author | Jim Johnson <jj@umn.edu> |
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| date | Sun, 17 Jul 2011 10:30:11 -0500 |
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| -1:000000000000 | 0:e5c3175506b7 |
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| 1 <tool id="merge_otu_maps" name="merge_otu_maps" version="1.2.0"> | |
| 2 <description>Merge OTU mapping files</description> | |
| 3 <requirements> | |
| 4 <requirement type="binary">merge_otu_maps.py</requirement> | |
| 5 </requirements> | |
| 6 <command interpreter="python"> | |
| 7 qiime_wrapper.py | |
| 8 --galaxy_tmpdir='$__new_file_path__' | |
| 9 merge_otu_maps.py | |
| 10 --otu_map_fps=$otu_map_fps | |
| 11 --output_fp=$output_fp | |
| 12 --failures_fp=$failures_fp | |
| 13 </command> | |
| 14 <inputs> | |
| 15 <param name="otu_map_fps" type="data" format="tabular" label="otu_map_fps" | |
| 16 help="the otu map filepaths, comma-separated and ordered as the OTU pickers were run [REQUIRED]"/> | |
| 17 <param name="failures_fp" type="data" format="txt" label="failures_fp" | |
| 18 help="failures filepath, if applicable"/> | |
| 19 </inputs> | |
| 20 <outputs> | |
| 21 <data format="txt" name="output_fp"/> | |
| 22 </outputs> | |
| 23 <tests> | |
| 24 </tests> | |
| 25 <help> | |
| 26 | |
| 27 </help> | |
| 28 </tool> | |
| 29 |