view merge_otu_maps.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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<tool id="merge_otu_maps" name="merge_otu_maps" version="1.2.0">
 <description>Merge OTU mapping files</description>
 <requirements>
  <requirement type="binary">merge_otu_maps.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  --galaxy_tmpdir='$__new_file_path__'
  merge_otu_maps.py
  --otu_map_fps=$otu_map_fps
  --output_fp=$output_fp
  --failures_fp=$failures_fp
 </command>
 <inputs>
  <param name="otu_map_fps" type="data" format="tabular" label="otu_map_fps"
   help="the otu map filepaths, comma-separated and ordered as the OTU pickers were run [REQUIRED]"/>
  <param name="failures_fp" type="data" format="txt" label="failures_fp"
   help="failures filepath, if applicable"/>
 </inputs>
 <outputs>
  <data format="txt" name="output_fp"/>
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>