Mercurial > repos > jjohnson > qiime
diff add_taxa.xml @ 0:e5c3175506b7 default tip
Initial tool configs for qiime, most need work.
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Sun, 17 Jul 2011 10:30:11 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/add_taxa.xml Sun Jul 17 10:30:11 2011 -0500 @@ -0,0 +1,31 @@ +<tool id="add_taxa" name="add_taxa" version="1.2.0"> + <description>Add taxa to OTU table</description> + <requirements> + <requirement type="binary">add_taxa.py</requirement> + </requirements> + <command interpreter="python"> + qiime_wrapper.py + add_taxa.py + --otu_file=$otu_file + --taxonomy_file=$taxonomy_file + --output_file=$output_file + --id_map_file=$id_map_file + </command> + <inputs> + <param name="otu_file" type="data" format="txt" label="otu_file" + help="Path to read otu file [REQUIRED]"/> + <param name="taxonomy_file" type="data" format="txt" label="taxonomy_file" + help="Path to read taxonomy file [REQUIRED]"/> + <param name="id_map_file" type="data" format="tabular" label="id_map_file" + help="Path to read seq id to otu map file [default: ('NO', 'DEFAULT')]"/> + </inputs> + <outputs> + <data format="txt" name="output_file" label="${tool.name} on ${on_string}"/> + </outputs> + <tests> + </tests> + <help> + + </help> +</tool> +