Mercurial > repos > jjohnson > qiime
view add_taxa.xml @ 0:e5c3175506b7 default tip
Initial tool configs for qiime, most need work.
author | Jim Johnson <jj@umn.edu> |
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date | Sun, 17 Jul 2011 10:30:11 -0500 |
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<tool id="add_taxa" name="add_taxa" version="1.2.0"> <description>Add taxa to OTU table</description> <requirements> <requirement type="binary">add_taxa.py</requirement> </requirements> <command interpreter="python"> qiime_wrapper.py add_taxa.py --otu_file=$otu_file --taxonomy_file=$taxonomy_file --output_file=$output_file --id_map_file=$id_map_file </command> <inputs> <param name="otu_file" type="data" format="txt" label="otu_file" help="Path to read otu file [REQUIRED]"/> <param name="taxonomy_file" type="data" format="txt" label="taxonomy_file" help="Path to read taxonomy file [REQUIRED]"/> <param name="id_map_file" type="data" format="tabular" label="id_map_file" help="Path to read seq id to otu map file [default: ('NO', 'DEFAULT')]"/> </inputs> <outputs> <data format="txt" name="output_file" label="${tool.name} on ${on_string}"/> </outputs> <tests> </tests> <help> </help> </tool>