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diff merge_mapping_files.xml @ 0:e5c3175506b7 default tip

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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/merge_mapping_files.xml	Sun Jul 17 10:30:11 2011 -0500
@@ -0,0 +1,29 @@
+<tool id="merge_mapping_files" name="merge_mapping_files" version="1.2.0">
+ <description>Merge mapping files</description>
+ <requirements>
+  <requirement type="binary">merge_mapping_files.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  --galaxy_tmpdir='$__new_file_path__'
+  merge_mapping_files.py
+  --mapping_fps=$mapping_fps
+  --output_fp=$output_fp
+  --no_data_value=$no_data_value
+ </command>
+ <inputs>
+  <param name="mapping_fps" type="data" format="tabular" label="mapping_fps"
+   help="the input mapping files in a comma-separated list [REQUIRED]"/>
+  <param name="no_data_value" type="text" value="no_data" label="no_data_value"
+   help="value to represent missing data (i.e., when all fields are not defined in all mapping files) [default: no_data]"/>
+ </inputs>
+ <outputs>
+  <data format="txt" name="output_fp"/>
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+