view merge_mapping_files.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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<tool id="merge_mapping_files" name="merge_mapping_files" version="1.2.0">
 <description>Merge mapping files</description>
 <requirements>
  <requirement type="binary">merge_mapping_files.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  --galaxy_tmpdir='$__new_file_path__'
  merge_mapping_files.py
  --mapping_fps=$mapping_fps
  --output_fp=$output_fp
  --no_data_value=$no_data_value
 </command>
 <inputs>
  <param name="mapping_fps" type="data" format="tabular" label="mapping_fps"
   help="the input mapping files in a comma-separated list [REQUIRED]"/>
  <param name="no_data_value" type="text" value="no_data" label="no_data_value"
   help="value to represent missing data (i.e., when all fields are not defined in all mapping files) [default: no_data]"/>
 </inputs>
 <outputs>
  <data format="txt" name="output_fp"/>
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>