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Initial tool configs for qiime, most need work.
author Jim Johnson <jj@umn.edu>
date Sun, 17 Jul 2011 10:30:11 -0500
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e5c3175506b7 Initial tool configs for qiime, most need work.
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1 <tool id="merge_mapping_files" name="merge_mapping_files" version="1.2.0">
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2 <description>Merge mapping files</description>
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3 <requirements>
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4 <requirement type="binary">merge_mapping_files.py</requirement>
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5 </requirements>
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6 <command interpreter="python">
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7 qiime_wrapper.py
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8 --galaxy_tmpdir='$__new_file_path__'
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9 merge_mapping_files.py
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10 --mapping_fps=$mapping_fps
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11 --output_fp=$output_fp
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12 --no_data_value=$no_data_value
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13 </command>
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14 <inputs>
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15 <param name="mapping_fps" type="data" format="tabular" label="mapping_fps"
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16 help="the input mapping files in a comma-separated list [REQUIRED]"/>
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17 <param name="no_data_value" type="text" value="no_data" label="no_data_value"
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18 help="value to represent missing data (i.e., when all fields are not defined in all mapping files) [default: no_data]"/>
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19 </inputs>
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20 <outputs>
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21 <data format="txt" name="output_fp"/>
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22 </outputs>
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23 <tests>
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24 </tests>
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25 <help>
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26
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27 </help>
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28 </tool>
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