Mercurial > repos > jjohnson > qiime
diff poller_example.xml @ 0:e5c3175506b7 default tip
Initial tool configs for qiime, most need work.
author | Jim Johnson <jj@umn.edu> |
---|---|
date | Sun, 17 Jul 2011 10:30:11 -0500 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/poller_example.xml Sun Jul 17 10:30:11 2011 -0500 @@ -0,0 +1,34 @@ +<tool id="poller_example" name="poller_example" version="1.2.0"> + <description>Create python file</description> + <requirements> + <requirement type="binary">poller_example.py</requirement> + </requirements> + <command interpreter="python"> + qiime_wrapper.py + --galaxy_tmpdir='$__new_file_path__' + poller_example.py + --polled_dir=$polled_dir + --poller_fp=$poller_fp + --python_exe_fp=$python_exe_fp + $suppress_custom_functions + </command> + <inputs> + <param name="polled_dir" type="text" label="polled_dir" + help="path to directory to poll [REQUIRED]"/> + <param name="poller_fp" type="data" format="txt" label="poller_fp" + help="full path to qiime/parallel/poller.py [default: /usr/local/lib/python2.6/site-packages/scripts/poller.py]"/> + <param name="python_exe_fp" type="data" format="txt" label="python_exe_fp" + help="full path to python executable [default: python]"/> + <param name="suppress_custom_functions" type="boolean" truevalue="--suppress_custom_functions" falsevalue="" checked="false" label="suppress_custom_functions" + help="use the default functions for checking run completion, processing results, and cleaning up (these are quiet) [default: False]"/> + </inputs> + <outputs> + + </outputs> + <tests> + </tests> + <help> + + </help> +</tool> +