Mercurial > repos > jjohnson > qiime
view poller_example.xml @ 0:e5c3175506b7 default tip
Initial tool configs for qiime, most need work.
author | Jim Johnson <jj@umn.edu> |
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date | Sun, 17 Jul 2011 10:30:11 -0500 |
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<tool id="poller_example" name="poller_example" version="1.2.0"> <description>Create python file</description> <requirements> <requirement type="binary">poller_example.py</requirement> </requirements> <command interpreter="python"> qiime_wrapper.py --galaxy_tmpdir='$__new_file_path__' poller_example.py --polled_dir=$polled_dir --poller_fp=$poller_fp --python_exe_fp=$python_exe_fp $suppress_custom_functions </command> <inputs> <param name="polled_dir" type="text" label="polled_dir" help="path to directory to poll [REQUIRED]"/> <param name="poller_fp" type="data" format="txt" label="poller_fp" help="full path to qiime/parallel/poller.py [default: /usr/local/lib/python2.6/site-packages/scripts/poller.py]"/> <param name="python_exe_fp" type="data" format="txt" label="python_exe_fp" help="full path to python executable [default: python]"/> <param name="suppress_custom_functions" type="boolean" truevalue="--suppress_custom_functions" falsevalue="" checked="false" label="suppress_custom_functions" help="use the default functions for checking run completion, processing results, and cleaning up (these are quiet) [default: False]"/> </inputs> <outputs> </outputs> <tests> </tests> <help> </help> </tool>